Summary of Gene (AT4G23670)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT4G23660.1 AT4G23660.2 TSS from cDNA TSS information AT4G23670 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 349 | - | 12333711 | -55 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 12333801 | -145 |
TSS clone | G | clone | - | 12333727 | -71 |
TSS clone | A | clone | - | 12333715 | -59 |
TSS clone | T | clone | - | 12333714 | -58 |
TSS clone | T | clone | - | 12333713 | -57 |
TSS clone | A | clone | - | 12333711 | -55 |
TSS clone | G | clone | - | 12333710 | -54 |
TSS clone | T | clone | - | 12333709 | -53 |
TSS clone | T | clone | - | 12333707 | -51 |
TSS clone | T | clone | - | 12333704 | -48 |
TSS clone | A | clone | - | 12333702 | -46 |
TSS clone | A | clone | - | 12333701 | -45 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCCCTATATAAACC | - | 12333737 | 12333750 | -81 | -94 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTTAACCG | - | 12333757 | 12333764 | -101 | -108 | |||
AtREG645 | TTTAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 82 | - | 12327450 | AT4G23650.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 12327459 | AT4G23650.1 |
TSS clone | G | clone | - | 12327450 | AT4G23650.1 |
TSS clone | A | clone | - | 12327449 | AT4G23650.1 |
TSS clone | T | clone | - | 12327439 | AT4G23650.1 |
TSS clone | A | clone | - | 12327432 | AT4G23650.1 |
TSS clone | G | clone | - | 12327425 | AT4G23650.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTCTCTC | - | 12327451 | 12327462 | AT4G23650.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACGCCACGTGGT | - | 12327513 | 12327524 | AT4G23650.1 | ||||
AtREG508 | ACGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | ACGCGGTTCAA | - | 12327543 | 12327553 | AT4G23650.1 | ||||
AtREG441 | ACGCGGTT | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG640 | CGGTTCAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |