Summary of Gene (AT4G23670)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G23670 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 349 | - | 12333711 | -55 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 12333801 | -145 |
TSS clone | G | clone | - | 12333727 | -71 |
TSS clone | A | clone | - | 12333715 | -59 |
TSS clone | T | clone | - | 12333714 | -58 |
TSS clone | T | clone | - | 12333713 | -57 |
TSS clone | A | clone | - | 12333711 | -55 |
TSS clone | G | clone | - | 12333710 | -54 |
TSS clone | T | clone | - | 12333709 | -53 |
TSS clone | T | clone | - | 12333707 | -51 |
TSS clone | T | clone | - | 12333704 | -48 |
TSS clone | A | clone | - | 12333702 | -46 |
TSS clone | A | clone | - | 12333701 | -45 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCCCTATATAAACC | - | 12333737 | 12333750 | -81 | -94 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTTAACCG | - | 12333757 | 12333764 | -101 | -108 | |||
AtREG645 | TTTAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GCCCATTAA | - | 12337616 | 12337624 | AT4G23680.1 | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG396 | CCCATTAA | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  |