PlantPromoterDB promoter information of AT4G23810
Summary of Gene (AT4G23810)
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Overview
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Focused view (chromosome 4: 12390389-12389190)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G23810 5'->3' (-) Promoter sequence AT4G23790.1
AT4G23800.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G23810
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 17 | - | 12393985 | -246 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 12393981 | -242 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTTTATATACC | - | 12394011 | 12394022 | -272 | -283 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACCCCAC | - | 12394168 | 12394175 | -429 | -436 | |||
| AtREG618 | CACCCCAC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 5 | + | 12390167 | AT4G23800.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 12390167 | AT4G23800.1 |
| TSS clone | C | clone | + | 12390168 | AT4G23800.1 |
| TSS clone | A | clone | + | 12390171 | AT4G23800.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTCTATATAAC | + | 12390130 | 12390141 | AT4G23800.1 | |
| Y Patch | CTCTCTCTCAT | + | 12390203 | 12390213 | AT4G23800.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GTCCGGTT | + | 12389908 | 12389915 | AT4G23800.1 | ||||
| AtREG573 | GTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TCGGTTTAG | + | 12389920 | 12389928 | AT4G23800.1 | ||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GACCGTTG | + | 12390116 | 12390123 | AT4G23800.1 | ||||
| AtREG553 | GACCGTTG | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||