Summary of Gene (AT4G23810)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G23810 5'->3' (-) Promoter sequence AT4G23800.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 17 | - | 12393985 | -246 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 12393981 | -242 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCTTTATATACC | - | 12394011 | 12394022 | -272 | -283 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACCCCAC | - | 12394168 | 12394175 | -429 | -436 | |||
AtREG618 | CACCCCAC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | + | 12390167 | AT4G23800.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 12390167 | AT4G23800.1 |
TSS clone | C | clone | + | 12390168 | AT4G23800.1 |
TSS clone | A | clone | + | 12390171 | AT4G23800.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTCTATATAAC | + | 12390130 | 12390141 | AT4G23800.1 | |
Y Patch | CTCTCTCTCAT | + | 12390203 | 12390213 | AT4G23800.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTCCGGTT | + | 12389908 | 12389915 | AT4G23800.1 | ||||
AtREG573 | GTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TCGGTTTAG | + | 12389920 | 12389928 | AT4G23800.1 | ||||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | GACCGTTG | + | 12390116 | 12390123 | AT4G23800.1 | ||||
AtREG553 | GACCGTTG | Auxin | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  |