PlantPromoterDB promoter information of AT4G23810
Summary of Gene (AT4G23810)
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Overview
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Focused view (chromosome 4: 12400189-12398990)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G23810 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G23810
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 17 | - | 12393985 | -246 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 12393981 | -242 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTTTATATACC | - | 12394011 | 12394022 | -272 | -283 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACCCCAC | - | 12394168 | 12394175 | -429 | -436 | |||
| AtREG618 | CACCCCAC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 64 | - | 12400091 | AT4G23820.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 12400111 | AT4G23820.1 |
| TSS clone | A | clone | - | 12400091 | AT4G23820.1 |
| TSS clone | G | clone | - | 12400090 | AT4G23820.1 |
| TSS clone | C | clone | - | 12400083 | AT4G23820.1 |
| TSS clone | T | clone | - | 12400077 | AT4G23820.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCTCTTC | - | 12400058 | 12400066 | AT4G23820.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TACACGTGA | + | 12400165 | 12400173 | AT4G23840.1 | ||||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG628 | ACACGTGA | DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | AACGGGCCATA | + | 12400177 | 12400187 | AT4G23840.1 | ||||
| AtREG401 | AACGGGCC | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | GGGCC | ||||
| AtREG479 | GGGCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | TCACGTGTA | - | 12400165 | 12400173 | AT4G23820.1 | ||||
| AtREG628 | TCACGTGT | DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG453 | CACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| REG | TATGGCCCGTT | - | 12400177 | 12400187 | AT4G23820.1 | ||||
| AtREG479 | TATGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG401 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | GGGCC | ||||