PlantPromoterDB promoter information of AT4G24370.1

Summary of Gene (AT4G24370.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G24370 TAIR NCBI
Gene model	AT4G24370.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 12613102-12611903)

`Genome position from initiation codon` `AT4G24390.1 TSS from cDNA TSS information AT4G24370.1 5'->3' (-) Promoter sequence AT4G24380.1 AT4G24380.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G24370.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 5 - 12612116 -14

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	5	-	12612116	-14

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 12612134 -32

TSS clone T clone - 12612126 -24

TSS clone A clone - 12612116 -14

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	12612134	-32
TSS clone	`T`	clone	-	12612126	-24
TSS clone	`A`	clone	-	12612116	-14

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CTAAACCGGTTTT - 12612169 12612181 -67 -79

AtREG511 CTAAACCG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG436   AAACCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG542      CCGGTTTT PPDB Motif AACCG(G/A) PLACE Motif

REG GAAACGACATCG - 12612227 12612238 -125 -136

AtREG576 GAAACGAC     PPDB Motif PLACE Motif

AtREG569 AAACGACA    PPDB Motif PLACE Motif

AtREG630     CGACATCG PPDB Motif PLACE Motif

REG CTAAACCGCGT - 12612241 12612251 -139 -149

AtREG511 CTAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG441    AACCGCGT Drought PPDB Motif PLACE Motif

REG CTTATTGGGCCAA - 12612356 12612368 -254 -266

AtREG611 CTTATTGG      PPDB Motif PLACE Motif

AtREG417 TTATTGGG     PPDB Motif GCCCA PLACE Motif

AtREG355   TATTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG352    ATTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420     TTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484      TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GGGCCGAT - 12612401 12612408 -299 -306

AtREG555 GGGCCGAT PPDB Motif GCCCA PLACE Motif GGGCC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CTAAACCGGTTTT`		-	12612169	12612181	-67	-79
	AtREG511	`CTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG436	`AAACCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG542	`CCGGTTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`GAAACGACATCG`		-	12612227	12612238	-125	-136
	AtREG576	`GAAACGAC`		PPDB Motif		PLACE Motif
	AtREG569	`AAACGACA`		PPDB Motif		PLACE Motif
	AtREG630	`CGACATCG`		PPDB Motif		PLACE Motif
REG	`CTAAACCGCGT`		-	12612241	12612251	-139	-149
	AtREG511	`CTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG441	`AACCGCGT`	Drought	PPDB Motif		PLACE Motif
REG	`CTTATTGGGCCAA`		-	12612356	12612368	-254	-266
	AtREG611	`CTTATTGG`		PPDB Motif		PLACE Motif
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TTGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`GGGCCGAT`		-	12612401	12612408	-299	-306
	AtREG555	`GGGCCGAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 21 + 12612535 AT4G24380.1, AT4G24380.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	21	+	12612535	AT4G24380.1, AT4G24380.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 12612535 AT4G24380.1, AT4G24380.2

TSS clone A clone + 12612537 AT4G24380.1, AT4G24380.2

TSS clone T clone + 12612538 AT4G24380.1, AT4G24380.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	12612535	AT4G24380.1, AT4G24380.2
TSS clone	`A`	clone	+	12612537	AT4G24380.1, AT4G24380.2
TSS clone	`T`	clone	+	12612538	AT4G24380.1, AT4G24380.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box GTTATAAAAA + 12612502 12612511 AT4G24380.1, AT4G24380.2

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GTTATAAAAA`	+	12612502	12612511	AT4G24380.1, AT4G24380.2
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACGCGGTTTAG + 12612241 12612251 AT4G24380.1, AT4G24380.2

AtREG441 ACGCGGTT    Drought PPDB Motif PLACE Motif

AtREG511    CGGTTTAG PPDB Motif AACCG(G/A) PLACE Motif

REG TTGGCCCAATAAG + 12612356 12612368 AT4G24380.1, AT4G24380.2

AtREG484 TTGGCCCA      PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420 TGGCCCAA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352   GGCCCAAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355    GCCCAATA   PPDB Motif GCCCA PLACE Motif

AtREG417     CCCAATAA PPDB Motif GCCCA PLACE Motif

AtREG611      CCAATAAG PPDB Motif PLACE Motif

REG ATCGGCCC + 12612401 12612408 AT4G24380.1, AT4G24380.2

AtREG555 ATCGGCCC PPDB Motif GCCCA PLACE Motif GGGCC