PlantPromoterDB promoter information of AT4G24380.2

Summary of Gene (AT4G24380.2)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G24380 TAIR NCBI
Gene model	AT4G24380.2
Description	unknown protein; INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF341 (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65400.1); Has 484 Blast hits to 484 proteins in 112 species: Archae - 0; Bacteria - 2; Metazoa - 89; Fungi - 296; Plants - 68; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 12611554-12612753)

`Genome position from initiation codon` `AT4G24380.1 TSS from cDNA TSS information AT4G24380.2 5'->3' (+) Promoter sequence AT4G24370.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G24380.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 21 + 12612535 -19

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	21	+	12612535	-19

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 12612535 -19

TSS clone A clone + 12612537 -17

TSS clone T clone + 12612538 -16

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	12612535	-19
TSS clone	`A`	clone	+	12612537	-17
TSS clone	`T`	clone	+	12612538	-16

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box GTTATAAAAA + 12612502 12612511 -52 -43

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GTTATAAAAA`	+	12612502	12612511	-52	-43
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGCGGTTTAG + 12612241 12612251 -313 -303

AtREG441 ACGCGGTT    Drought PPDB Motif PLACE Motif

AtREG511    CGGTTTAG PPDB Motif AACCG(G/A) PLACE Motif

REG TTGGCCCAATAAG + 12612356 12612368 -198 -186

AtREG484 TTGGCCCA      PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420 TGGCCCAA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352   GGCCCAAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355    GCCCAATA   PPDB Motif GCCCA PLACE Motif

AtREG417     CCCAATAA PPDB Motif GCCCA PLACE Motif

AtREG611      CCAATAAG PPDB Motif PLACE Motif

REG ATCGGCCC + 12612401 12612408 -153 -146

AtREG555 ATCGGCCC PPDB Motif GCCCA PLACE Motif GGGCC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGCGGTTTAG`		+	12612241	12612251	-313	-303
	AtREG441	`ACGCGGTT`	Drought	PPDB Motif		PLACE Motif
	AtREG511	`CGGTTTAG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTGGCCCAATAAG`		+	12612356	12612368	-198	-186
	AtREG484	`TTGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG417	`CCCAATAA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG611	`CCAATAAG`		PPDB Motif		PLACE Motif
REG	`ATCGGCCC`		+	12612401	12612408	-153	-146
	AtREG555	`ATCGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 5 - 12612116 AT4G24370.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	5	-	12612116	AT4G24370.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 12612134 AT4G24370.1

TSS clone T clone - 12612126 AT4G24370.1

TSS clone A clone - 12612116 AT4G24370.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	12612134	AT4G24370.1
TSS clone	`T`	clone	-	12612126	AT4G24370.1
TSS clone	`A`	clone	-	12612116	AT4G24370.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CTAAACCGGTTTT - 12612169 12612181 AT4G24370.1

AtREG511 CTAAACCG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG436   AAACCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG542      CCGGTTTT PPDB Motif AACCG(G/A) PLACE Motif

REG GAAACGACATCG - 12612227 12612238 AT4G24370.1

AtREG576 GAAACGAC     PPDB Motif PLACE Motif

AtREG569 AAACGACA    PPDB Motif PLACE Motif

AtREG630     CGACATCG PPDB Motif PLACE Motif

REG CTAAACCGCGT - 12612241 12612251 AT4G24370.1

AtREG511 CTAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG441    AACCGCGT Drought PPDB Motif PLACE Motif

REG CTTATTGGGCCAA - 12612356 12612368 AT4G24370.1

AtREG611 CTTATTGG      PPDB Motif PLACE Motif

AtREG417 TTATTGGG     PPDB Motif GCCCA PLACE Motif

AtREG355   TATTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG352    ATTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420     TTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484      TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GGGCCGAT - 12612401 12612408 AT4G24370.1

AtREG555 GGGCCGAT PPDB Motif GCCCA PLACE Motif GGGCC