PlantPromoterDB promoter information of AT4G25050.1
Summary of Gene (AT4G25050.1)
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Overview
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Focused view (chromosome 4: 12869178-12870377)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G25050.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G25050.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 82 | + | 12870115 | -63 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 12870115 | -63 |
| TSS clone | A | clone | + | 12870116 | -62 |
| TSS clone | T | clone | + | 12870158 | -20 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGATGGGCCCGTT | + | 12869891 | 12869903 | -287 | -275 | |||
| AtREG572 | AGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG403 | GATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG391 | ATGGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG401 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | GGGCC | ||||
| REG | ACTGGGCCTGT | + | 12869923 | 12869933 | -255 | -245 | |||
| AtREG384 | ACTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG410 | CTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG370 | TGGGCCTG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG433 | GGGCCTGT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | GTGGGACCCAC | + | 12869946 | 12869956 | -232 | -222 | |||
| AtREG406 | GTGGGACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG596 | TGGGACCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| AtREG523 | GGACCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | ATAGGCCT | + | 12869974 | 12869981 | -204 | -197 | |||
| AtREG649 | ATAGGCCT | PPDB Motif | PLACE Motif | ||||||
| REG | ACGACGCCGT | + | 12870043 | 12870052 | -135 | -126 | |||
| AtREG537 | ACGACGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG540 | GACGCCGT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||