PlantPromoterDB promoter information of AT4G25100
Summary of Gene (AT4G25100)
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Overview
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Focused view (chromosome 4: 12887501-12886302)
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Genome position
from initiation codon AT4G25100.2 AT4G25100.3 AT4G25100.4 TSS from cDNA TSS information AT4G25100 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G25100
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 741 | - | 12886755 | -254 |
| TSS peak | C | 4 | - | 12886476 | 25 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 12886776 | -275 |
| TSS clone | G | clone | - | 12886757 | -256 |
| TSS clone | C | clone | - | 12886756 | -255 |
| TSS clone | G | clone | - | 12886755 | -254 |
| TSS clone | T | clone | - | 12886754 | -253 |
| TSS clone | G | clone | - | 12886753 | -252 |
| TSS clone | T | clone | - | 12886752 | -251 |
| TSS clone | C | clone | - | 12886750 | -249 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCCTC | - | 12886743 | 12886750 | -242 | -249 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTTTGGGC | - | 12886562 | 12886569 | -61 | -68 | |||
| AtREG529 | TTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||