Summary of Gene (AT4G25200.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G25200.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 12917017 | -72 |
TSS clone | C | clone | + | 12917018 | -71 |
TSS clone | C | clone | + | 12917022 | -67 |
TSS clone peak | G | clone | + | 12917024 | -65 |
TSS clone | A | clone | + | 12917067 | -22 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCTAGGGT | + | 12916775 | 12916782 | -314 | -307 | |||
AtREG658 | TCTAGGGT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | GGCCTAAT | + | 12916817 | 12916824 | -272 | -265 | |||
AtREG506 | GGCCTAAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GATGGGCCGTAGCCCGTTA | + | 12916828 | 12916846 | -261 | -243 | |||
AtREG403 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG368 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG499 | GGGCCGTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG399 | GCCCGTTA | PPDB Motif | ACGGGC  | PLACE Motif | YAACKG, CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |