PlantPromoterDB promoter information of AT4G25820
Summary of Gene (AT4G25820)
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Overview
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Focused view (chromosome 4: 13129349-13130548)
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Genome position
from initiation codon AT4G25820.1 TSS from cDNA TSS information AT4G25820 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G25820
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 13130297 | -52 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 13130297 | -52 |
| TSS clone | T | clone | + | 13130298 | -51 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATATAAC | + | 13130259 | 13130270 | -90 | -79 |
| Y Patch | CTCTCTTT | + | 13130256 | 13130263 | -93 | -86 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCTTTT | + | 13130072 | 13130079 | -277 | -270 | |||
| AtREG459 | GGCCTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | TTGAACCG | + | 13130168 | 13130175 | -181 | -174 | |||
| AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCACGTCG | + | 13130229 | 13130236 | -120 | -113 | |||
| AtREG465 | CCACGTCG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||