PlantPromoterDB promoter information of AT4G26740
Summary of Gene (AT4G26740)
|
Overview
|
Focused view (chromosome 4: 13476278-13475079)
|
Genome position
from initiation codon AT4G26750.1 TSS from cDNA TSS information AT4G26740 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT4G26740
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 13475328 | -50 |
| TSS clone | A | clone | - | 13475322 | -44 |
| TSS clone peak | C | clone | - | 13475308 | -30 |
| TSS clone | C | clone | - | 13475306 | -28 |
| TSS clone | A | clone | - | 13475292 | -14 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGCCACG | - | 13475382 | 13475389 | -104 | -111 | |||
| AtREG560 | CCGCCACG | ABA | PPDB Motif | CCGAC | PLACE Motif | GCCAC | |||
| REG | CGGCGCGTG | - | 13475395 | 13475403 | -117 | -125 | |||
| AtREG538 | CGGCGCGT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG486 | GGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | ACGTGTCT | - | 13475492 | 13475499 | -214 | -221 | |||
| AtREG470 | ACGTGTCT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | GTTGGGCCTATATAAAAGCCCATAGAGGCCC | - | 13475554 | 13475584 | -276 | -306 | |||
| AtREG449 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG358 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG362 | GGGCCTAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG487 | GGCCTATA | PPDB Motif | PLACE Motif | ||||||
| AtREG549 | TAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG477 | AGCCCATA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG411 | AGAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||