Summary of Gene (AT4G27000.1)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT4G27000.1 5'->3' (-) Promoter sequence AT4G27010.1
AT4G27010.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | - | 13557808 | -45 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 13557852 | -89 |
TSS clone | T | clone | - | 13557850 | -87 |
TSS clone | T | clone | - | 13557848 | -85 |
TSS clone | T | clone | - | 13557846 | -83 |
TSS clone | C | clone | - | 13557845 | -82 |
TSS clone | T | clone | - | 13557844 | -81 |
TSS clone | T | clone | - | 13557842 | -79 |
TSS clone | T | clone | - | 13557840 | -77 |
TSS clone | C | clone | - | 13557835 | -72 |
TSS clone | T | clone | - | 13557818 | -55 |
TSS clone | C | clone | - | 13557812 | -49 |
TSS clone | A | clone | - | 13557807 | -44 |
TSS clone | C | clone | - | 13557779 | -16 |
TSS clone | A | clone | - | 13557777 | -14 |
TSS clone | G | clone | - | 13557776 | -13 |
TSS clone | T | clone | - | 13557771 | -8 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTCTCTCTCTCTCTTT | - | 13557838 | 13557858 | -75 | -95 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATATTGGGCCATA | - | 13557903 | 13557915 | -140 | -152 | |||
AtREG509 | ATATTGGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG420 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG437 | TGGGCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG479 | GGGCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | ATAATGGGCCGA | - | 13557928 | 13557939 | -165 | -176 | |||
AtREG546 | ATAATGGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG393 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | CTTAACCGGGTT | - | 13557954 | 13557965 | -191 | -202 | |||
AtREG605 | CTTAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG501 | TTAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG455 | AACCGGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG516 | ACCGGGTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACCCTAGA | - | 13557970 | 13557977 | -207 | -214 | |||
AtREG658 | ACCCTAGA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | GACCGGTTCG | - | 13557996 | 13558005 | -233 | -242 | |||
AtREG552 | GACCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG528 | ACCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |