PlantPromoterDB promoter information of AT4G27260
Summary of Gene (AT4G27260)
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Overview
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Focused view (chromosome 4: 13652704-13653903)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G27260 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G27260
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 30 | + | 13653612 | -92 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 13653610 | -94 |
| TSS clone | C | clone | + | 13653613 | -91 |
| TSS clone | T | clone | + | 13653618 | -86 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTCTATATATATC | + | 13653573 | 13653586 | -131 | -118 |
| Y Patch | TTCTCCTCT | + | 13653569 | 13653577 | -135 | -127 |
| Y Patch | CTTTCTCTTTCTTTCTTCCTC | + | 13653591 | 13653611 | -113 | -93 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATACCCTT | + | 13653510 | 13653517 | -194 | -187 | |||
| AtREG623 | ATACCCTT | PPDB Motif | ACCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||