PlantPromoterDB promoter information of AT4G27370.1

Summary of Gene (AT4G27370.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G27370 TAIR NCBI
Gene model	AT4G27370.1
Description	member of Myosin-like proteins

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Overview

Focused view (chromosome 4: 13701780-13700581)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G27370.1 5'->3' (-) Promoter sequence AT4G27380.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G27370.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 - 13701126 -346

TSS peak A 2 - 13701103 -323

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	-	13701126	-346
TSS peak	`A`	2	-	13701103	-323

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTCTCTCTT - 13701084 13701094 -304 -314

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTCTCTCTT`	-	13701084	13701094	-304	-314
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAAAGGCCCATTTA - 13701180 13701193 -400 -413

AtREG467 TAAAGGCC       PPDB Motif PLACE Motif

AtREG359 AAAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361     GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG386      GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443       CCCATTTA PPDB Motif GCCCA PLACE Motif

REG CTTATTGGGCCCATA - 13701201 13701215 -421 -435

AtREG611 CTTATTGG        PPDB Motif PLACE Motif

AtREG417 TTATTGGG       PPDB Motif GCCCA PLACE Motif

AtREG355   TATTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG352    ATTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392     TTGGGCCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG422      TGGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG391       GGGCCCAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364        GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GTCGGGTCA - 13701235 13701243 -455 -463

AtREG390 GTCGGGTC PPDB Motif CCGAC, GGGACCC PLACE Motif CCGAC

AtREG617 TCGGGTCA PPDB Motif PLACE Motif

REG ACGGCACG - 13701310 13701317 -530 -537

AtREG522 ACGGCACG PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAAAGGCCCATTTA`		-	13701180	13701193	-400	-413
	AtREG467	`TAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG386	`GCCCATTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG443	`CCCATTTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CTTATTGGGCCCATA`		-	13701201	13701215	-421	-435
	AtREG611	`CTTATTGG`		PPDB Motif		PLACE Motif
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG392	`TTGGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG422	`TGGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG391	`GGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG364	`GGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`GTCGGGTCA`		-	13701235	13701243	-455	-463
	AtREG390	`GTCGGGTC`		PPDB Motif	`CCGAC, GGGACCC`	PLACE Motif	`CCGAC`
	AtREG617	`TCGGGTCA`		PPDB Motif		PLACE Motif
REG	`ACGGCACG`		-	13701310	13701317	-530	-537
	AtREG522	`ACGGCACG`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 13701266 AT4G27380.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	13701266	AT4G27380.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 13701258 AT4G27380.1

TSS clone A clone + 13701259 AT4G27380.1

TSS clone A clone + 13701260 AT4G27380.1

TSS clone T clone + 13701265 AT4G27380.1

TSS clone T clone + 13701299 AT4G27380.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	13701258	AT4G27380.1
TSS clone	`A`	clone	+	13701259	AT4G27380.1
TSS clone	`A`	clone	+	13701260	AT4G27380.1
TSS clone	`T`	clone	+	13701265	AT4G27380.1
TSS clone	`T`	clone	+	13701299	AT4G27380.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTCTC + 13701283 13701290 AT4G27380.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTCTC`	+	13701283	13701290	AT4G27380.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TCCAACGG + 13701064 13701071 AT4G27380.1

AtREG554 TCCAACGG PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

REG TAAATGGGCCTTTA + 13701180 13701193 AT4G27380.1

AtREG443 TAAATGGG       PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    ATGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353     TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359      GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

AtREG467       GGCCTTTA PPDB Motif PLACE Motif

REG TATGGGCCCAATAAG + 13701201 13701215 AT4G27380.1

AtREG364 TATGGGCC        PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG391 ATGGGCCC       PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG422   TGGGCCCA      PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392    GGGCCCAA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355      GCCCAATA   PPDB Motif GCCCA PLACE Motif

AtREG417       CCCAATAA PPDB Motif GCCCA PLACE Motif

AtREG611        CCAATAAG PPDB Motif PLACE Motif