PlantPromoterDB promoter information of AT4G27440
Summary of Gene (AT4G27440)
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Overview
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Focused view (chromosome 4: 13724648-13725847)
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Genome position
from initiation codon AT4G27440.1 AT4G27440.2 TSS from cDNA TSS information AT4G27440 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G27440
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 61 | + | 13725591 | -57 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 13725546 | -102 |
| TSS clone | A | clone | + | 13725591 | -57 |
| TSS clone | T | clone | + | 13725592 | -56 |
| TSS clone | C | clone | + | 13725593 | -55 |
| TSS clone | A | clone | + | 13725595 | -53 |
| TSS clone | C | clone | + | 13725596 | -52 |
| TSS clone | C | clone | + | 13725599 | -49 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTTTC | + | 13725575 | 13725583 | -73 | -65 |
| Y Patch | CTCTCTCTTT | + | 13725623 | 13725632 | -25 | -16 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAGGGTAT | + | 13725304 | 13725311 | -344 | -337 | |||
| AtREG623 | AAGGGTAT | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | TAAACGACGACGTGGCAG | + | 13725453 | 13725470 | -195 | -178 | |||
| AtREG565 | TAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | AAACGACG | PPDB Motif | PLACE Motif | ||||||
| AtREG648 | AACGACGA | PPDB Motif | PLACE Motif | ||||||
| AtREG526 | GACGACGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG465 | CGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG388 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG468 | CGTGGCAG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||