PlantPromoterDB promoter information of AT4G27500.1
Summary of Gene (AT4G27500.1)
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Overview
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Focused view (chromosome 4: 13742614-13743813)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G27500.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G27500.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 13743173 | -441 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 13743110 | -504 |
| TSS clone | A | clone | + | 13743172 | -442 |
| TSS clone | A | clone | + | 13743173 | -441 |
| TSS clone | T | clone | + | 13743238 | -376 |
| TSS clone | A | clone | + | 13743259 | -355 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAAAGCCC | + | 13742927 | 13742935 | -687 | -679 | |||
| AtREG601 | ATAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG365 | TAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATGGCCCAAT | + | 13742985 | 13742994 | -629 | -620 | |||
| AtREG437 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG352 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | ACCGGGTT | + | 13743040 | 13743047 | -574 | -567 | |||
| AtREG516 | ACCGGGTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||