PlantPromoterDB promoter information of AT4G27780.1
Summary of Gene (AT4G27780.1)
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Overview
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Focused view (chromosome 4: 13846774-13847973)
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Genome position
from initiation codon AT4G27765.1 TSS from cDNA TSS information AT4G27780.1 5'->3' (+) Promoter sequence AT4G27765.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G27780.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 13847562 | -212 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 13847562 | -212 |
| TSS clone | T | clone | + | 13847642 | -132 |
| TSS clone | T | clone | + | 13847697 | -77 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTCTT | + | 13847583 | 13847590 | -191 | -184 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TACGTGTCGT | + | 13847269 | 13847278 | -505 | -496 | |||
| AtREG557 | TACGTGTC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG478 | ACGTGTCG | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG428 | CGTGTCGT | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif | PLACE Motif | |||||
| REG | GCCTTTAA | + | 13847288 | 13847295 | -486 | -479 | |||
| AtREG639 | GCCTTTAA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | CCCAATTA | + | 13847468 | 13847475 | -306 | -299 | |||
| AtREG600 | CCCAATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||