PlantPromoterDB promoter information of AT4G27960
Summary of Gene (AT4G27960)
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Overview
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Focused view (chromosome 4: 13918203-13917004)
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Genome position
from initiation codon AT4G27960.2 TSS from cDNA TSS information AT4G27960 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G27960
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 13917379 | -176 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 13917418 | -215 |
| TSS clone | T | clone | - | 13917383 | -180 |
| TSS clone | T | clone | - | 13917380 | -177 |
| TSS clone | A | clone | - | 13917379 | -176 |
| TSS clone | A | clone | - | 13917378 | -175 |
| TSS clone | T | clone | - | 13917376 | -173 |
| TSS clone | G | clone | - | 13917344 | -141 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTTCTCCT | - | 13917380 | 13917391 | -177 | -188 |
| Y Patch | CTTCTTCTTCTCTTCC | - | 13917403 | 13917418 | -200 | -215 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTTAGGCCCAC | - | 13917549 | 13917559 | -346 | -356 | |||
| AtREG535 | GTTAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG360 | TTAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG358 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG482 | AGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | AACCGCGTTA | - | 13917589 | 13917598 | -386 | -395 | |||
| AtREG441 | AACCGCGT | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG488 | CCGCGTTA | SA | PPDB Motif | PLACE Motif | |||||
| REG | TAAACGACGA | - | 13917649 | 13917658 | -446 | -455 | |||
| AtREG565 | TAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | AAACGACG | PPDB Motif | PLACE Motif | ||||||
| AtREG648 | AACGACGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||