Summary of Gene (AT4G27960.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT4G27970.1 TSS from cDNA TSS information AT4G27960.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 13 | - | 13917379 | -86 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 13917418 | -125 |
TSS clone | T | clone | - | 13917383 | -90 |
TSS clone | T | clone | - | 13917380 | -87 |
TSS clone | A | clone | - | 13917379 | -86 |
TSS clone | A | clone | - | 13917378 | -85 |
TSS clone | T | clone | - | 13917376 | -83 |
TSS clone | G | clone | - | 13917344 | -51 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTTCTCCT | - | 13917380 | 13917391 | -87 | -98 |
Y Patch | CTTCTTCTTCTCTTCC | - | 13917403 | 13917418 | -110 | -125 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTTAGGCCCAC | - | 13917549 | 13917559 | -256 | -266 | |||
AtREG535 | GTTAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG360 | TTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG482 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | AACCGCGTTA | - | 13917589 | 13917598 | -296 | -305 | |||
AtREG441 | AACCGCGT | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG488 | CCGCGTTA | SA | PPDB Motif |   | PLACE Motif |   | |||
REG | TAAACGACGA | - | 13917649 | 13917658 | -356 | -365 | |||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG648 | AACGACGA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |