PlantPromoterDB promoter information of AT4G28060.1
Summary of Gene (AT4G28060.1)
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Overview
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Focused view (chromosome 4: 13945709-13944510)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G28060.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G28060.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 13945690 | -981 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 13945699 | -990 |
| TSS clone | T | clone | - | 13945675 | -966 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCTTTCTTCTCCT | - | 13945642 | 13945659 | -933 | -950 |
| Y Patch | TTTCTTCT | - | 13945721 | 13945728 | -1012 | -1019 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GAGCCCAACA | - | 13945754 | 13945763 | -1045 | -1054 | |||
| AtREG533 | GAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG574 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
| AtREG543 | GCCCAACA | PPDB Motif | GCCCA | PLACE Motif | CAACA | ||||
| REG | CTTAGGCCCATTAG | - | 13945769 | 13945782 | -1060 | -1073 | |||
| AtREG563 | CTTAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG360 | TTAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG358 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG357 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG558 | CCCATTAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCGGTTTAA | - | 13945796 | 13945804 | -1087 | -1095 | |||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CTAAACCGA | - | 13945820 | 13945828 | -1111 | -1119 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||