PlantPromoterDB promoter information of AT4G28390
Summary of Gene (AT4G28390)
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Overview
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Focused view (chromosome 4: 14043781-14042582)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G28390 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G28390
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 15 | - | 14043274 | -493 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 14043276 | -495 |
| TSS clone | C | clone | - | 14043269 | -488 |
| TSS clone | A | clone | - | 14043245 | -464 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTCTCTCTCTCTC | - | 14043227 | 14043243 | -446 | -462 |
| Y Patch | CTCTTCTC | - | 14043258 | 14043265 | -477 | -484 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGTCAAA | - | 14043360 | 14043367 | -579 | -586 | |||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
| REG | AATTGGGCCCAGA | - | 14043375 | 14043387 | -594 | -606 | |||
| AtREG418 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG352 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG392 | TTGGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG422 | TGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG363 | GGGCCCAG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG397 | GGCCCAGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||