PlantPromoterDB promoter information of AT4G28750
Summary of Gene (AT4G28750)
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Overview
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Focused view (chromosome 4: 14204888-14203689)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G28750 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G28750
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 315 | - | 14203931 | -43 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 14203957 | -69 |
| TSS clone | A | clone | - | 14203954 | -66 |
| TSS clone | A | clone | - | 14203949 | -61 |
| TSS clone | C | clone | - | 14203941 | -53 |
| TSS clone | A | clone | - | 14203939 | -51 |
| TSS clone | C | clone | - | 14203938 | -50 |
| TSS clone | T | clone | - | 14203937 | -49 |
| TSS clone | T | clone | - | 14203935 | -47 |
| TSS clone | T | clone | - | 14203930 | -42 |
| TSS clone | T | clone | - | 14203928 | -40 |
| TSS clone | G | clone | - | 14203926 | -38 |
| TSS clone | C | clone | - | 14203925 | -37 |
| TSS clone | A | clone | - | 14203923 | -35 |
| TSS clone | T | clone | - | 14203916 | -28 |
| TSS clone | A | clone | - | 14203914 | -26 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTACACGTGGCAG | - | 14204044 | 14204056 | -156 | -168 | |||
| AtREG562 | GTACACGT | ABA, Auxin | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG468 | CGTGGCAG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| REG | CCACGTCAC | - | 14204086 | 14204094 | -198 | -206 | |||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG466 | CACGTCAC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||