PlantPromoterDB promoter information of AT4G29480.1

Summary of Gene (AT4G29480.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G29480 TAIR NCBI
Gene model	AT4G29480.1
Description	mitochondrial ATP synthase g subunit family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit G, mitochondrial (InterPro:IPR006808); BEST Arabidopsis thaliana protein match is: mitochondrial ATP synthase g subunit family protein (TAIR:AT2G19680.2); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 14488257-14487058)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G29480.1 5'->3' (-) Promoter sequence AT4G29490.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G29480.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 31 - 14487729 -472

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	31	-	14487729	-472

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 14487743 -486

TSS clone G clone - 14487740 -483

TSS clone T clone - 14487739 -482

TSS clone T clone - 14487735 -478

TSS clone G clone - 14487728 -471

TSS clone A clone - 14487718 -461

TSS clone A clone - 14487712 -455

TSS clone A clone - 14487707 -450

TSS clone T clone - 14487702 -445

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	14487743	-486
TSS clone	`G`	clone	-	14487740	-483
TSS clone	`T`	clone	-	14487739	-482
TSS clone	`T`	clone	-	14487735	-478
TSS clone	`G`	clone	-	14487728	-471
TSS clone	`A`	clone	-	14487718	-461
TSS clone	`A`	clone	-	14487712	-455
TSS clone	`A`	clone	-	14487707	-450
TSS clone	`T`	clone	-	14487702	-445

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CATCTCTC - 14487697 14487704 -440 -447

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CATCTCTC`	-	14487697	14487704	-440	-447
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GAAACGACATCG - 14487803 14487814 -546 -557

AtREG576 GAAACGAC     PPDB Motif PLACE Motif

AtREG569 AAACGACA    PPDB Motif PLACE Motif

AtREG630     CGACATCG PPDB Motif PLACE Motif

REG ACGACGTCGTT - 14487829 14487839 -572 -582

AtREG431 ACGACGTCGT PPDB Motif ACGT PLACE Motif ACGT

AtREG493    ACGTCGTT PPDB Motif ACGT PLACE Motif ACGT

REG CAAAACGCTGTCGTTTT - 14487867 14487883 -610 -626

AtREG585 CAAAACGC          PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG626   AAACGCTG        PPDB Motif AAACG(C/G) PLACE Motif

AtREG569         TGTCGTTT PPDB Motif PLACE Motif

AtREG520          GTCGTTTT PPDB Motif PLACE Motif

REG ATAAAGCC - 14487891 14487898 -634 -641

AtREG601 ATAAAGCC PPDB Motif PLACE Motif

REG GGCCTAAT - 14487900 14487907 -643 -650

AtREG506 GGCCTAAT PPDB Motif PLACE Motif

REG TTTCCGGTTA - 14487990 14487999 -733 -742

AtREG644 TTTCCGGT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG534 TTCCGGTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG621   TCCGGTTA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GAAACGACATCG`		-	14487803	14487814	-546	-557
	AtREG576	`GAAACGAC`		PPDB Motif		PLACE Motif
	AtREG569	`AAACGACA`		PPDB Motif		PLACE Motif
	AtREG630	`CGACATCG`		PPDB Motif		PLACE Motif
REG	`ACGACGTCGTT`		-	14487829	14487839	-572	-582
	AtREG431	`ACGACGTCGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG493	`ACGTCGTT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
REG	`CAAAACGCTGTCGTTTT`		-	14487867	14487883	-610	-626
	AtREG585	`CAAAACGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif	`CAAAACGC`
	AtREG626	`AAACGCTG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG569	`TGTCGTTT`		PPDB Motif		PLACE Motif
	AtREG520	`GTCGTTTT`		PPDB Motif		PLACE Motif
REG	`ATAAAGCC`		-	14487891	14487898	-634	-641
	AtREG601	`ATAAAGCC`		PPDB Motif		PLACE Motif
REG	`GGCCTAAT`		-	14487900	14487907	-643	-650
	AtREG506	`GGCCTAAT`		PPDB Motif		PLACE Motif
REG	`TTTCCGGTTA`		-	14487990	14487999	-733	-742
	AtREG644	`TTTCCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`TTCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG621	`TCCGGTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone + 14487900 AT4G29490.1

TSS clone peak A clone + 14487929 AT4G29490.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	+	14487900	AT4G29490.1
TSS clone peak	`A`	clone	+	14487929	AT4G29490.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCCTCC + 14487955 14487962 AT4G29490.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCCTCC`	+	14487955	14487962	AT4G29490.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CGATGTCGTTTC + 14487803 14487814 AT4G29490.1

AtREG630 CGATGTCG     PPDB Motif PLACE Motif

AtREG569    TGTCGTTT PPDB Motif PLACE Motif

AtREG576     GTCGTTTC PPDB Motif PLACE Motif

REG AACGACGTCGT + 14487829 14487839 AT4G29490.1

AtREG493 AACGACGT    PPDB Motif ACGT PLACE Motif ACGT

AtREG431 ACGACGTCGT PPDB Motif ACGT PLACE Motif ACGT

REG AAAACGACAGCGTTTTG + 14487867 14487883 AT4G29490.1

AtREG520 AAAACGAC          PPDB Motif PLACE Motif

AtREG569 AAACGACA         PPDB Motif PLACE Motif

AtREG626        CAGCGTTT   PPDB Motif AAACG(C/G) PLACE Motif

AtREG585          GCGTTTTG PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC