PlantPromoterDB promoter information of AT4G30190.1
Summary of Gene (AT4G30190.1)
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Overview
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Focused view (chromosome 4: 14776920-14775721)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G30190.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G30190.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 34 | - | 14776054 | -134 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 14776056 | -136 |
| TSS clone | G | clone | - | 14776053 | -133 |
| TSS clone | A | clone | - | 14776052 | -132 |
| TSS clone | A | clone | - | 14776051 | -131 |
| TSS clone | A | clone | - | 14776048 | -128 |
| TSS clone | C | clone | - | 14776047 | -127 |
| TSS clone | A | clone | - | 14775935 | -15 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTATAAAAA | - | 14776079 | 14776088 | -159 | -168 |
| Y Patch | TCTCTCCTCCTCTCCTTCTCTCT | - | 14776020 | 14776042 | -100 | -122 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCGTCGTTTT | - | 14776095 | 14776104 | -175 | -184 | |||
| AtREG648 | TCGTCGTT | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | AAAACGGCG | - | 14776112 | 14776120 | -192 | -200 | |||
| AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG524 | AAACGGCG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | TGGGACCCAC | - | 14776127 | 14776136 | -207 | -216 | |||
| AtREG596 | TGGGACCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| AtREG523 | GGACCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | CAACGGTC | - | 14776212 | 14776219 | -292 | -299 | |||
| AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
| REG | GGACCCAC | - | 14776272 | 14776279 | -352 | -359 | |||
| AtREG523 | GGACCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||