Summary of Gene (AT4G30530.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT4G30530.1 5'->3' (+) Promoter sequence AT4G30570.1
AT4G30580.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 23 | + | 14920534 | -71 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 14920534 | -71 |
TSS clone | C | clone | + | 14920535 | -70 |
TSS clone | T | clone | + | 14920578 | -27 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CATATAAATA | + | 14920498 | 14920507 | -107 | -98 |
Y Patch | TCTCTCTCCT | + | 14920551 | 14920560 | -54 | -45 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGTGGAA | + | 14920451 | 14920458 | -154 | -147 | |||
AtREG627 | ACGTGGAA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | C | 8 | - | 14932900 | AT4G30570.1 |
TSS peak | A | 2 | - | 14932662 | AT4G30570.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TAAAACGCTG | - | 14932889 | 14932898 | AT4G30570.1 | ||||
AtREG564 | TAAAACGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG626 | AAACGCTG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |