PlantPromoterDB promoter information of AT4G31180.2

Summary of Gene (AT4G31180.2)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G31180 TAIR NCBI
Gene model	AT4G31180.2
Description	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative; FUNCTIONS IN: aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion, aspartyl-tRNA aminoacylation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Aspartyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative (TAIR:AT4G26870.1); Has 17233 Blast hits to 14062 proteins in 1714 species: Archae - 297; Bacteria - 9930; Metazoa - 655; Fungi - 618; Plants - 225; Viruses - 0; Other Eukaryotes - 5508 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 15155696-15156895)

`Genome position from initiation codon` `AT4G31180.1 TSS from cDNA TSS information AT4G31180.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G31180.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 26 + 15155884 -812

TSS peak G 15 + 15156670 -26

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	26	+	15155884	-812
TSS peak	`G`	15	+	15156670	-26

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 15155880 -816

TSS clone A clone + 15155884 -812

TSS clone T clone + 15156663 -33

TSS clone A clone + 15156676 -20

TSS clone T clone + 15156680 -16

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	15155880	-816
TSS clone	`A`	clone	+	15155884	-812
TSS clone	`T`	clone	+	15156663	-33
TSS clone	`A`	clone	+	15156676	-20
TSS clone	`T`	clone	+	15156680	-16

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CCCATTTA + 15155651 15155658 -1045 -1038

AtREG443 CCCATTTA PPDB Motif GCCCA PLACE Motif

REG TAATTGGG + 15155774 15155781 -922 -915

AtREG600 TAATTGGG PPDB Motif GCCCA PLACE Motif

REG ACACGCGCT + 15155822 15155830 -874 -866

AtREG385 ACACGCGC PPDB Motif ACGCGC PLACE Motif ACACNNG

AtREG381 CACGCGCT PPDB Motif ACGCGC PLACE Motif

REG CGGCGCGT + 15156497 15156504 -199 -192

AtREG538 CGGCGCGT PPDB Motif ACGCGC PLACE Motif

REG GGGTCAAAACG + 15156575 15156585 -121 -111

AtREG592 GGGTCAAA PPDB Motif PLACE Motif TTGAC, TTGACC

AtREG653 TCAAAACG PPDB Motif AAACG(C/G) PLACE Motif

REG GGGCCTTTT + 15156605 15156613 -91 -83

AtREG359 GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

AtREG459 GGCCTTTT PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CCCATTTA`		+	15155651	15155658	-1045	-1038
	AtREG443	`CCCATTTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TAATTGGG`		+	15155774	15155781	-922	-915
	AtREG600	`TAATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ACACGCGCT`		+	15155822	15155830	-874	-866
	AtREG385	`ACACGCGC`		PPDB Motif	`ACGCGC`	PLACE Motif	`ACACNNG`
	AtREG381	`CACGCGCT`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`CGGCGCGT`		+	15156497	15156504	-199	-192
	AtREG538	`CGGCGCGT`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`GGGTCAAAACG`		+	15156575	15156585	-121	-111
	AtREG592	`GGGTCAAA`		PPDB Motif		PLACE Motif	`TTGAC, TTGACC`
	AtREG653	`TCAAAACG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`GGGCCTTTT`		+	15156605	15156613	-91	-83
	AtREG359	`GGGCCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG459	`GGCCTTTT`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCCAATTA - 15155774 15155781 AT4G31170.1, AT4G31170.2, AT4G31170.3

AtREG600 CCCAATTA PPDB Motif GCCCA PLACE Motif

REG AGCGCGTGT - 15155822 15155830 AT4G31170.1, AT4G31170.2, AT4G31170.3

AtREG381 AGCGCGTG PPDB Motif ACGCGC PLACE Motif

AtREG385 GCGCGTGT PPDB Motif ACGCGC PLACE Motif ACACNNG

REG CCCAATTA - 15155874 15155881 AT4G31170.1, AT4G31170.2, AT4G31170.3

AtREG600 CCCAATTA PPDB Motif GCCCA PLACE Motif