PlantPromoterDB promoter information of AT4G31290

Summary of Gene (AT4G31290)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G31290 TAIR NCBI
Gene model	AT4G31290
Description	ChaC-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ChaC-like protein (InterPro:IPR006840); BEST Arabidopsis thaliana protein match is: ChaC-like family protein (TAIR:AT5G26220.1); Has 1092 Blast hits to 1086 proteins in 379 species: Archae - 0; Bacteria - 540; Metazoa - 194; Fungi - 85; Plants - 75; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 15185851-15187050)

`Genome position from initiation codon` `AT4G31290.1 TSS from cDNA TSS information AT4G31290 5'->3' (+) Promoter sequence AT4G31280.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G31290

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 18 + 15185997 -854

TSS peak A 13 + 15186200 -651

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	18	+	15185997	-854
TSS peak	`A`	13	+	15186200	-651

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone + 15185991 -860

TSS clone T clone + 15185992 -859

TSS clone T clone + 15185995 -856

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	+	15185991	-860
TSS clone	`T`	clone	+	15185992	-859
TSS clone	`T`	clone	+	15185995	-856

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TCTCTATAAATG + 15185953 15185964 -898 -887

Y Patch CTCTCTCTCT + 15185948 15185957 -903 -894

Y Patch CTCTTCTTCC + 15185965 15185974 -886 -877

Y Patch CCTCCTCCTC + 15185984 15185993 -867 -858

Y Patch TTCTCTTC + 15186228 15186235 -623 -616

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TCTCTATAAATG`	+	15185953	15185964	-898	-887
Y Patch	`CTCTCTCTCT`	+	15185948	15185957	-903	-894
Y Patch	`CTCTTCTTCC`	+	15185965	15185974	-886	-877
Y Patch	`CCTCCTCCTC`	+	15185984	15185993	-867	-858
Y Patch	`TTCTCTTC`	+	15186228	15186235	-623	-616
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GTCACGTGAC + 15185849 15185858 -1002 -993

AtREG583 GTCACGTGAC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

REG CGTGGCAT + 15185917 15185924 -934 -927

AtREG448 CGTGGCAT ABA, DREB1Aox PPDB Motif PLACE Motif GCCAC

REG CGGTTCGGT + 15185933 15185941 -918 -910

AtREG456 CGGTTCGG PPDB Motif AACCG(G/A) PLACE Motif

AtREG451 GGTTCGGT PPDB Motif PLACE Motif

REG CGAACCGAAACGACGCCGTT + 15186102 15186121 -749 -730

AtREG575 CGAACCGA             PPDB Motif AACCG(G/A) PLACE Motif

AtREG576       GAAACGAC       PPDB Motif PLACE Motif

AtREG415        AAACGACG      PPDB Motif PLACE Motif

AtREG439         AACGACGC     PPDB Motif PLACE Motif

AtREG537          ACGACGCC    PPDB Motif PLACE Motif

AtREG540            GACGCCGT PPDB Motif PLACE Motif

AtREG497             ACGCCGTT PPDB Motif AAACG(C/G), CCAACGG PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GTCACGTGAC`		+	15185849	15185858	-1002	-993
	AtREG583	`GTCACGTGAC`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
REG	`CGTGGCAT`		+	15185917	15185924	-934	-927
	AtREG448	`CGTGGCAT`	ABA, DREB1Aox	PPDB Motif		PLACE Motif	`GCCAC`
REG	`CGGTTCGGT`		+	15185933	15185941	-918	-910
	AtREG456	`CGGTTCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG451	`GGTTCGGT`		PPDB Motif		PLACE Motif
REG	`CGAACCGAAACGACGCCGTT`		+	15186102	15186121	-749	-730
	AtREG575	`CGAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG576	`GAAACGAC`		PPDB Motif		PLACE Motif
	AtREG415	`AAACGACG`		PPDB Motif		PLACE Motif
	AtREG439	`AACGACGC`		PPDB Motif		PLACE Motif
	AtREG537	`ACGACGCC`		PPDB Motif		PLACE Motif
	AtREG540	`GACGCCGT`		PPDB Motif		PLACE Motif
	AtREG497	`ACGCCGTT`		PPDB Motif	`AAACG(C/G), CCAACGG`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None