PlantPromoterDB promoter information of AT4G31420.1

Summary of Gene (AT4G31420.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G31420 TAIR NCBI
Gene model	AT4G31420.1
Description	zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: FZF; transcription factor (TAIR:AT2G24500.1); Has 503 Blast hits to 486 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 160; Plants - 53; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).

#

Overview

Focused view (chromosome 4: 15248763-15247564)

`Genome position from initiation codon` `AT4G31420.2 TSS from cDNA TSS information AT4G31420.1 5'->3' (-) Promoter sequence AT4G31430.1 AT4G31430.2 AT4G31430.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G31420.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 2 - 15247948 -185

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	2	-	15247948	-185

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 15247927 -164

TSS clone G clone - 15247924 -161

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	15247927	-164
TSS clone	`G`	clone	-	15247924	-161

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TCGGGTCA - 15248011 15248018 -248 -255

AtREG617 TCGGGTCA PPDB Motif PLACE Motif

REG GAATGGGCCAAATGGGCTA - 15248027 15248045 -264 -282

AtREG643 GAATGGGC            PPDB Motif GCCCA PLACE Motif

AtREG361 AATGGGCC           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490   ATGGGCCA          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484    TGGGCCAA         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG386          AAATGGGC   PPDB Motif GCCCA PLACE Motif

AtREG372           AATGGGCT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG581            ATGGGCTA PPDB Motif GCCCA PLACE Motif TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TCGGGTCA`		-	15248011	15248018	-248	-255
	AtREG617	`TCGGGTCA`		PPDB Motif		PLACE Motif
REG	`GAATGGGCCAAATGGGCTA`		-	15248027	15248045	-264	-282
	AtREG643	`GAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG361	`AATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`ATGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG386	`AAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG372	`AATGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG581	`ATGGGCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 + 15248456 AT4G31430.1, AT4G31430.2, AT4G31430.3

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	+	15248456	AT4G31430.1, AT4G31430.2, AT4G31430.3

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 15248456 AT4G31430.1, AT4G31430.2, AT4G31430.3

TSS clone A clone + 15248457 AT4G31430.1, AT4G31430.2, AT4G31430.3

TSS clone C clone + 15248460 AT4G31430.1, AT4G31430.2, AT4G31430.3

TSS clone C clone + 15248502 AT4G31430.1, AT4G31430.2, AT4G31430.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	15248456	AT4G31430.1, AT4G31430.2, AT4G31430.3
TSS clone	`A`	clone	+	15248457	AT4G31430.1, AT4G31430.2, AT4G31430.3
TSS clone	`C`	clone	+	15248460	AT4G31430.1, AT4G31430.2, AT4G31430.3
TSS clone	`C`	clone	+	15248502	AT4G31430.1, AT4G31430.2, AT4G31430.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCCCTCCTCCTCT + 15248486 15248499 AT4G31430.1, AT4G31430.2, AT4G31430.3

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCCCTCCTCCTCT`	+	15248486	15248499	AT4G31430.1, AT4G31430.2, AT4G31430.3
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTTAACCG + 15248356 15248363 AT4G31430.1, AT4G31430.2, AT4G31430.3

AtREG645 TTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG CCCAATTA + 15248397 15248404 AT4G31430.1, AT4G31430.2, AT4G31430.3

AtREG600 CCCAATTA PPDB Motif GCCCA PLACE Motif