PlantPromoterDB promoter information of AT4G31770.1

Summary of Gene (AT4G31770.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G31770 TAIR NCBI
Gene model	AT4G31770.1
Description	calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, protein serine/threonine phosphatase activity; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lariat debranching enzyme, C-terminal (InterPro:IPR007708), Metallophosphoesterase (InterPro:IPR004843); Has 452 Blast hits to 397 proteins in 153 species: Archae - 0; Bacteria - 12; Metazoa - 181; Fungi - 155; Plants - 28; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).

#

Overview

Focused view (chromosome 4: 15373422-15372223)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G31770.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G31770.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 8 - 15372650 -228

TSS peak A 8 - 15372552 -130

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	8	-	15372650	-228
TSS peak	`A`	8	-	15372552	-130

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 15372595 -173

TSS clone T clone - 15372534 -112

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	15372595	-173
TSS clone	`T`	clone	-	15372534	-112

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCTCTTTCT - 15372530 15372538 -108 -116

Y Patch CTCTTCTT - 15372553 15372560 -131 -138

Y Patch CTTCTTCTCT - 15372562 15372571 -140 -149

Y Patch TTCTTCTTCTTCCTC - 15372609 15372623 -187 -201

Y Patch CTCTTCTCTTC - 15372668 15372678 -246 -256

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCTCTTTCT`	-	15372530	15372538	-108	-116
Y Patch	`CTCTTCTT`	-	15372553	15372560	-131	-138
Y Patch	`CTTCTTCTCT`	-	15372562	15372571	-140	-149
Y Patch	`TTCTTCTTCTTCCTC`	-	15372609	15372623	-187	-201
Y Patch	`CTCTTCTCTTC`	-	15372668	15372678	-246	-256
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GAAACGACATCG - 15372629 15372640 -207 -218

AtREG576 GAAACGAC     PPDB Motif PLACE Motif

AtREG569 AAACGACA    PPDB Motif PLACE Motif

AtREG630     CGACATCG PPDB Motif PLACE Motif

REG GAAACGAC - 15372660 15372667 -238 -245

AtREG576 GAAACGAC PPDB Motif PLACE Motif

REG CGCGTTTT - 15372691 15372698 -269 -276

AtREG566 CGCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

REG TTTTGGGCTTTT - 15372730 15372741 -308 -319

AtREG529 TTTTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409     GGGCTTTT PPDB Motif GCCCA PLACE Motif

REG TAGTGGGCTTTTGGGCCTAAC - 15372765 15372785 -343 -363

AtREG532 TAGTGGGC              PPDB Motif GCCCA PLACE Motif

AtREG510 AGTGGGCT             PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG518   GTGGGCTT            PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT           PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409     GGGCTTTT          PPDB Motif GCCCA PLACE Motif

AtREG529         TTTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG373          TTTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356           TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358            TGGGCCTA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG360             GGGCCTAA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG535              GGCCTAAC PPDB Motif PLACE Motif

REG TTTAACGG - 15372823 15372830 -401 -408

AtREG610 TTTAACGG PPDB Motif PLACE Motif YAACKG, CNGTTR

REG AATAGGCCC - 15372834 15372842 -412 -420

AtREG424 AATAGGCC PPDB Motif PLACE Motif

AtREG362 ATAGGCCC PPDB Motif GCCCA PLACE Motif GGGCC

REG CCCATTAT - 15372872 15372879 -450 -457

AtREG546 CCCATTAT PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GAAACGACATCG`		-	15372629	15372640	-207	-218
	AtREG576	`GAAACGAC`		PPDB Motif		PLACE Motif
	AtREG569	`AAACGACA`		PPDB Motif		PLACE Motif
	AtREG630	`CGACATCG`		PPDB Motif		PLACE Motif
REG	`GAAACGAC`		-	15372660	15372667	-238	-245
	AtREG576	`GAAACGAC`		PPDB Motif		PLACE Motif
REG	`CGCGTTTT`		-	15372691	15372698	-269	-276
	AtREG566	`CGCGTTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`TTTTGGGCTTTT`		-	15372730	15372741	-308	-319
	AtREG529	`TTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG469	`TTTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG409	`GGGCTTTT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TAGTGGGCTTTTGGGCCTAAC`		-	15372765	15372785	-343	-363
	AtREG532	`TAGTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG510	`AGTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG518	`GTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG409	`GGGCTTTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG529	`TTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG373	`TTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG358	`TGGGCCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG360	`GGGCCTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG535	`GGCCTAAC`		PPDB Motif		PLACE Motif
REG	`TTTAACGG`		-	15372823	15372830	-401	-408
	AtREG610	`TTTAACGG`		PPDB Motif		PLACE Motif	`YAACKG, CNGTTR`
REG	`AATAGGCCC`		-	15372834	15372842	-412	-420
	AtREG424	`AATAGGCC`		PPDB Motif		PLACE Motif
	AtREG362	`ATAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`CCCATTAT`		-	15372872	15372879	-450	-457
	AtREG546	`CCCATTAT`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None