PlantPromoterDB promoter information of AT4G32470.2

Summary of Gene (AT4G32470.2)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G32470 TAIR NCBI
Gene model	AT4G32470.2
Description	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome bd ubiquinol oxidase, 14 kDa subunit (InterPro:IPR003197); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex 14 kDa protein, putative (TAIR:AT5G25450.1); Has 264 Blast hits to 264 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 41; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 15672095-15670896)

`Genome position from initiation codon` `AT4G32470.1 AT4G32475.1 TSS from cDNA TSS information AT4G32470.2 5'->3' (-) Promoter sequence AT4G32475 AT4G32475.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G32470.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 21 - 15671161 -66

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	21	-	15671161	-66

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 15671181 -86

TSS clone A clone - 15671177 -82

TSS clone G clone - 15671173 -78

TSS clone G clone - 15671170 -75

TSS clone T clone - 15671169 -74

TSS clone T clone - 15671166 -71

TSS clone G clone - 15671164 -69

TSS clone C clone - 15671162 -67

TSS clone C clone - 15671160 -65

TSS clone G clone - 15671158 -63

TSS clone G clone - 15671137 -42

TSS clone C clone - 15671134 -39

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	15671181	-86
TSS clone	`A`	clone	-	15671177	-82
TSS clone	`G`	clone	-	15671173	-78
TSS clone	`G`	clone	-	15671170	-75
TSS clone	`T`	clone	-	15671169	-74
TSS clone	`T`	clone	-	15671166	-71
TSS clone	`G`	clone	-	15671164	-69
TSS clone	`C`	clone	-	15671162	-67
TSS clone	`C`	clone	-	15671160	-65
TSS clone	`G`	clone	-	15671158	-63
TSS clone	`G`	clone	-	15671137	-42
TSS clone	`C`	clone	-	15671134	-39

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTTC - 15671142 15671149 -47 -54

Y Patch TTCCTCTCTC - 15671183 15671192 -88 -97

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTTC`	-	15671142	15671149	-47	-54
Y Patch	`TTCCTCTCTC`	-	15671183	15671192	-88	-97
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AGATGGGCCACTTAAGGCCCAAAT - 15671223 15671246 -128 -151

AtREG572 AGATGGGC                 PPDB Motif GCCCA PLACE Motif

AtREG403 GATGGGCC                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490   ATGGGCCA               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG445    TGGGCCAC              PPDB Motif GCCCA PLACE Motif GCCAC, GGGCC, TGGGCY

AtREG416            TTAAGGCC      PPDB Motif PLACE Motif

AtREG351             TAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353              AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356               AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373                GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG421                 GCCCAAAT PPDB Motif GCCCA PLACE Motif

REG TTAAGGCCCAAAT - 15671296 15671308 -201 -213

AtREG416 TTAAGGCC      PPDB Motif PLACE Motif

AtREG351 TAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373     GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG421      GCCCAAAT PPDB Motif GCCCA PLACE Motif

REG ACTGGGCCTTAAATGACG - 15671324 15671341 -229 -246

AtREG384 ACTGGGCC           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG410 CTGGGCCT          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353   TGGGCCTT         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351    GGGCCTTA        PPDB Motif GCCCA PLACE Motif GGGCC

AtREG416     GGCCTTAA       PPDB Motif PLACE Motif

AtREG657           AAATGACG PPDB Motif PLACE Motif

REG CGTGGCAG - 15671423 15671430 -328 -335

AtREG468 CGTGGCAG ABA PPDB Motif PLACE Motif GCCAC

REG CCCGGGTC - 15671436 15671443 -341 -348

AtREG593 CCCGGGTC PPDB Motif GGGACCC PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AGATGGGCCACTTAAGGCCCAAAT`		-	15671223	15671246	-128	-151
	AtREG572	`AGATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG403	`GATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`ATGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG445	`TGGGCCAC`		PPDB Motif	`GCCCA`	PLACE Motif	`GCCAC, GGGCC, TGGGCY`
	AtREG416	`TTAAGGCC`		PPDB Motif		PLACE Motif
	AtREG351	`TAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG373	`GGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG421	`GCCCAAAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTAAGGCCCAAAT`		-	15671296	15671308	-201	-213
	AtREG416	`TTAAGGCC`		PPDB Motif		PLACE Motif
	AtREG351	`TAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG373	`GGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG421	`GCCCAAAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ACTGGGCCTTAAATGACG`		-	15671324	15671341	-229	-246
	AtREG384	`ACTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG410	`CTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG416	`GGCCTTAA`		PPDB Motif		PLACE Motif
	AtREG657	`AAATGACG`		PPDB Motif		PLACE Motif
REG	`CGTGGCAG`		-	15671423	15671430	-328	-335
	AtREG468	`CGTGGCAG`	ABA	PPDB Motif		PLACE Motif	`GCCAC`
REG	`CCCGGGTC`		-	15671436	15671443	-341	-348
	AtREG593	`CCCGGGTC`		PPDB Motif	`GGGACCC`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None