Summary of Gene (AT4G33040)
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Overview |
Genome position
from initiation codon AT4G33050.2 AT4G33050.3 AT4G33050.4 TSS from cDNA TSS information AT4G33040 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | - | 15941257 | -44 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 15941330 | -117 |
TSS clone | A | clone | - | 15941256 | -43 |
TSS clone | C | clone | - | 15941243 | -30 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTCTATATATACA | - | 15941282 | 15941295 | -69 | -82 |
Y Patch | TTTCTCTCTCTCTCTCT | - | 15941225 | 15941241 | -12 | -28 |
Y Patch | TCTCCTCTTCTTCTT | - | 15941258 | 15941272 | -45 | -59 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATTGGCCC | - | 15941350 | 15941357 | -137 | -144 | |||
AtREG446 | ATTGGCCC | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | |||
REG | CCCAATAA | - | 15941373 | 15941380 | -160 | -167 | |||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |