PlantPromoterDB promoter information of AT4G33040

Summary of Gene (AT4G33040)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G33040 TAIR NCBI
Gene model	AT4G33040
Description	glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT5G11930.1); Has 731 Blast hits to 730 proteins in 125 species: Archae - 0; Bacteria - 12; Metazoa - 224; Fungi - 76; Plants - 401; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

#

Overview

Focused view (chromosome 4: 15947513-15946314)

`Genome position from initiation codon` `AT4G33050.1 AT4G33050.2 AT4G33050.3 AT4G33050.4 TSS from cDNA TSS information AT4G33040 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G33040

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 8 - 15941257 -44

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	8	-	15941257	-44

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 15941330 -117

TSS clone A clone - 15941256 -43

TSS clone C clone - 15941243 -30

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	15941330	-117
TSS clone	`A`	clone	-	15941256	-43
TSS clone	`C`	clone	-	15941243	-30

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TTTCTATATATACA - 15941282 15941295 -69 -82

Y Patch TTTCTCTCTCTCTCTCT - 15941225 15941241 -12 -28

Y Patch TCTCCTCTTCTTCTT - 15941258 15941272 -45 -59

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TTTCTATATATACA`	-	15941282	15941295	-69	-82
Y Patch	`TTTCTCTCTCTCTCTCT`	-	15941225	15941241	-12	-28
Y Patch	`TCTCCTCTTCTTCTT`	-	15941258	15941272	-45	-59
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATTGGCCC - 15941350 15941357 -137 -144

AtREG446 ATTGGCCC CK PPDB Motif GCCCA PLACE Motif GGGCC

REG CCCAATAA - 15941373 15941380 -160 -167

AtREG417 CCCAATAA PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATTGGCCC`		-	15941350	15941357	-137	-144
	AtREG446	`ATTGGCCC`	CK	PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`CCCAATAA`		-	15941373	15941380	-160	-167
	AtREG417	`CCCAATAA`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 2 - 15947009 AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	2	-	15947009	AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 15947026 AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4

TSS clone A clone - 15947023 AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4

TSS clone T clone - 15947022 AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4

TSS clone T clone - 15947016 AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	15947026	AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4
TSS clone	`A`	clone	-	15947023	AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4
TSS clone	`T`	clone	-	15947022	AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4
TSS clone	`T`	clone	-	15947016	AT4G33050.3, AT4G33050.1, AT4G33050.2, AT4G33050.4

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TACCCTTA - 15947058 15947065 AT4G33050.1, AT4G33050.2, AT4G33050.3, AT4G33050.4

AtREG570 TACCCTTA PPDB Motif ACCCT PLACE Motif