PlantPromoterDB promoter information of AT4G33140.1
Summary of Gene (AT4G33140.1)
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Overview
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Focused view (chromosome 4: 15980648-15981847)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G33140.1 5'->3' (+) Promoter sequence AT4G33130.1
AT4G33130.2 AT4G33130.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G33140.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 15981513 | -135 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAACCGGAT | + | 15981302 | 15981311 | -346 | -337 | |||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GACCGACT | + | 15981347 | 15981354 | -301 | -294 | |||
| AtREG638 | GACCGACT | DREB1Aox, ABA | PPDB Motif | CCGAC | PLACE Motif | CCGAC, RCCGAC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | T | clone | - | 15980695 | AT4G33130.1, AT4G33130.2, AT4G33130.3 |
| TSS clone peak | T | clone | - | 15980668 | AT4G33130.1, AT4G33130.2, AT4G33130.3 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTTCTTCTTCTCT | - | 15980671 | 15980687 | AT4G33130.1, AT4G33130.2, AT4G33130.3 | |
| Y Patch | CTTTCTTC | - | 15980693 | 15980700 | AT4G33130.1, AT4G33130.2, AT4G33130.3 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||