PlantPromoterDB promoter information of AT4G33680.1

Summary of Gene (AT4G33680.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G33680 TAIR NCBI
Gene model	AT4G33680.1
Description	Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.

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Overview

Focused view (chromosome 4: 16175630-16174431)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G33680.1 5'->3' (-) Promoter sequence AT4G33690.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G33680.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 - 16174679 -49

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	-	16174679	-49

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 16174683 -53

TSS clone G clone - 16174675 -45

TSS clone C clone - 16174674 -44

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	16174683	-53
TSS clone	`G`	clone	-	16174675	-45
TSS clone	`C`	clone	-	16174674	-44

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CCAAACCGAA - 16174726 16174735 -96 -105

AtREG550 CCAAACCG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG568   AAACCGAA PPDB Motif AACCG(G/A) PLACE Motif

REG AAACCGAACCGGAACAAACCGGAT - 16174751 16174774 -121 -144

AtREG568 AAACCGAA                 PPDB Motif AACCG(G/A) PLACE Motif

AtREG556 AACCGAAC                PPDB Motif AACCG(G/A) PLACE Motif

AtREG451   ACCGAACC               PPDB Motif PLACE Motif

AtREG456    CCGAACCG              PPDB Motif AACCG(G/A) PLACE Motif

AtREG423     CGAACCGG             PPDB Motif AACCG(G/A) PLACE Motif

AtREG579      GAACCGGA            PPDB Motif AACCG(G/A) PLACE Motif

AtREG534       AACCGGAA           PPDB Motif AACCG(G/A) PLACE Motif

AtREG496               CAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521                AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG561                 AACCGGAT PPDB Motif AACCG(G/A) PLACE Motif

REG GGCGTTTT - 16174865 16174872 -235 -242

AtREG650 GGCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CCAAACCGAA`		-	16174726	16174735	-96	-105
	AtREG550	`CCAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG568	`AAACCGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`AAACCGAACCGGAACAAACCGGAT`		-	16174751	16174774	-121	-144
	AtREG568	`AAACCGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG556	`AACCGAAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG451	`ACCGAACC`		PPDB Motif		PLACE Motif
	AtREG456	`CCGAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG423	`CGAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG579	`GAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`AACCGGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG496	`CAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG561	`AACCGGAT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`GGCGTTTT`		-	16174865	16174872	-235	-242
	AtREG650	`GGCGTTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone + 16174819 AT4G33690.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	+	16174819	AT4G33690.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTTCTCTCTCT + 16174820 16174830 AT4G33690.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTTCTCTCTCT`	+	16174820	16174830	AT4G33690.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAACGACGC + 16174536 16174545 AT4G33690.1

AtREG520 AAAACGAC   PPDB Motif PLACE Motif

AtREG415 AAACGACG PPDB Motif PLACE Motif

AtREG439   AACGACGC PPDB Motif PLACE Motif

REG TTCGGTTTGG + 16174726 16174735 AT4G33690.1

AtREG568 TTCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG550   CGGTTTGG PPDB Motif AACCG(G/A) PLACE Motif

REG ATCCGGTTTGTTCCGGTTCGGTTT + 16174751 16174774 AT4G33690.1

AtREG561 ATCCGGTT                 PPDB Motif AACCG(G/A) PLACE Motif

AtREG521 TCCGGTTT                PPDB Motif AACCG(G/A) PLACE Motif

AtREG496   CCGGTTTG               PPDB Motif AACCG(G/A) PLACE Motif

AtREG534           TTCCGGTT       PPDB Motif AACCG(G/A) PLACE Motif

AtREG579            TCCGGTTC      PPDB Motif AACCG(G/A) PLACE Motif

AtREG423             CCGGTTCG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG456              CGGTTCGG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG451               GGTTCGGT   PPDB Motif PLACE Motif

AtREG556                GTTCGGTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG568                 TTCGGTTT PPDB Motif AACCG(G/A) PLACE Motif