PlantPromoterDB promoter information of AT4G34050

Summary of Gene (AT4G34050)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G34050 TAIR NCBI
Gene model	AT4G34050
Description	caffeoyl-CoA 3-O-methyltransferase, putative; FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: caffeoyl-CoA 3-O-methyltransferase, putative (TAIR:AT4G26220.1); Has 3455 Blast hits to 3452 proteins in 740 species: Archae - 19; Bacteria - 1446; Metazoa - 216; Fungi - 70; Plants - 444; Viruses - 0; Other Eukaryotes - 1260 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 16309844-16311043)

`Genome position from initiation codon` `AT4G34050.1 AT4G34050.2 TSS from cDNA TSS information AT4G34050 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G34050

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 264 + 16310776 -68

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	264	+	16310776	-68

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone + 16310775 -69

TSS clone A clone + 16310776 -68

TSS clone C clone + 16310777 -67

TSS clone A clone + 16310779 -65

TSS clone A clone + 16310780 -64

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	+	16310775	-69
TSS clone	`A`	clone	+	16310776	-68
TSS clone	`C`	clone	+	16310777	-67
TSS clone	`A`	clone	+	16310779	-65
TSS clone	`A`	clone	+	16310780	-64

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TCTTTATATAGA + 16310742 16310753 -102 -91

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TCTTTATATAGA`	+	16310742	16310753	-102	-91
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GGGACCCAC + 16310623 16310631 -221 -213

AtREG615 GGGACCCA ABA PPDB Motif GGGACCC PLACE Motif

AtREG523 GGACCCAC PPDB Motif GGGACCC PLACE Motif

REG GACCGGTTTT + 16310683 16310692 -161 -152

AtREG552 GACCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG436 ACCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG542   CCGGTTTT PPDB Motif AACCG(G/A) PLACE Motif

REG GAACCGGT + 16310707 16310714 -137 -130

AtREG528 GAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

REG CGAACCGGTC + 16310716 16310725 -128 -119

AtREG423 CGAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG528 GAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

AtREG552   AACCGGTC PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GGGACCCAC`		+	16310623	16310631	-221	-213
	AtREG615	`GGGACCCA`	ABA	PPDB Motif	`GGGACCC`	PLACE Motif
	AtREG523	`GGACCCAC`		PPDB Motif	`GGGACCC`	PLACE Motif
REG	`GACCGGTTTT`		+	16310683	16310692	-161	-152
	AtREG552	`GACCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG436	`ACCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG542	`CCGGTTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`GAACCGGT`		+	16310707	16310714	-137	-130
	AtREG528	`GAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CGAACCGGTC`		+	16310716	16310725	-128	-119
	AtREG423	`CGAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG528	`GAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG552	`AACCGGTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None