Summary of Gene (AT4G34290)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G34290 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 23 | + | 16410835 | -48 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ACTATATAAGC | + | 16410800 | 16410810 | -83 | -73 |
Y Patch | CGTCTTCT | + | 16410846 | 16410853 | -37 | -30 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AACGACGA | + | 16410786 | 16410793 | -97 | -90 | |||
AtREG648 | AACGACGA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 34 | + | 16398034 | AT4G34260.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 16398035 | AT4G34260.1 |
TSS clone | A | clone | + | 16398038 | AT4G34260.1 |
TSS clone | C | clone | + | 16398045 | AT4G34260.1 |
TSS clone | G | clone | + | 16398094 | AT4G34260.1 |
TSS clone | A | clone | + | 16398126 | AT4G34260.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |