Summary of Gene (AT4G34290)
|
Overview |
Genome position
from initiation codon AT4G34265.1 AT4G34265.2 TSS from cDNA TSS information AT4G34290 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 23 | + | 16410835 | -48 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ACTATATAAGC | + | 16410800 | 16410810 | -83 | -73 |
Y Patch | CGTCTTCT | + | 16410846 | 16410853 | -37 | -30 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AACGACGA | + | 16410786 | 16410793 | -97 | -90 | |||
AtREG648 | AACGACGA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | C | 4 | + | 16401397 | AT4G34265.1, AT4G34265.2 |
TSS peak | G | 23 | + | 16402280 | AT4G34265.1, AT4G34265.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 16402269 | AT4G34265.1, AT4G34265.2 |
TSS clone | T | clone | + | 16402274 | AT4G34265.1, AT4G34265.2 |
TSS clone | G | clone | + | 16402280 | AT4G34265.1, AT4G34265.2 |
TSS clone | G | clone | + | 16402281 | AT4G34265.1, AT4G34265.2 |
TSS clone | C | clone | + | 16402285 | AT4G34265.1, AT4G34265.2 |
TSS clone | A | clone | + | 16402293 | AT4G34265.1, AT4G34265.2 |
TSS clone | G | clone | + | 16402308 | AT4G34265.1, AT4G34265.2 |
TSS clone | C | clone | + | 16402309 | AT4G34265.1, AT4G34265.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCTC | + | 16402231 | 16402239 | AT4G34265.1, AT4G34265.2 | |
Y Patch | TCTCTTCTT | + | 16402270 | 16402278 | AT4G34265.1, AT4G34265.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATAAACCGAACCA | + | 16402197 | 16402209 | AT4G34265.1, AT4G34265.2 | ||||
AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG451 | ACCGAACC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG655 | CCGAACCA | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCAAACCG | + | 16402212 | 16402219 | AT4G34265.1, AT4G34265.2 | ||||
AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |