PlantPromoterDB promoter information of AT4G34290

Summary of Gene (AT4G34290)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G34290 TAIR NCBI
Gene model	AT4G34290
Description	SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT2G14880.1); Has 806 Blast hits to 766 proteins in 168 species: Archae - 0; Bacteria - 129; Metazoa - 128; Fungi - 124; Plants - 206; Viruses - 9; Other Eukaryotes - 210 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 16401733-16402932)

`Genome position from initiation codon` `AT4G34260.1 AT4G34265.1 AT4G34265.2 TSS from cDNA TSS information AT4G34290 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G34290

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 23 + 16410835 -48

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	23	+	16410835	-48

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box ACTATATAAGC + 16410800 16410810 -83 -73

Y Patch CGTCTTCT + 16410846 16410853 -37 -30

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`ACTATATAAGC`	+	16410800	16410810	-83	-73
Y Patch	`CGTCTTCT`	+	16410846	16410853	-37	-30
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AACGACGA + 16410786 16410793 -97 -90

AtREG648 AACGACGA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AACGACGA`		+	16410786	16410793	-97	-90
	AtREG648	`AACGACGA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 23 + 16402280 AT4G34265.1, AT4G34265.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	23	+	16402280	AT4G34265.1, AT4G34265.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 16402269 AT4G34265.1, AT4G34265.2

TSS clone T clone + 16402274 AT4G34265.1, AT4G34265.2

TSS clone G clone + 16402280 AT4G34265.1, AT4G34265.2

TSS clone G clone + 16402281 AT4G34265.1, AT4G34265.2

TSS clone C clone + 16402285 AT4G34265.1, AT4G34265.2

TSS clone A clone + 16402293 AT4G34265.1, AT4G34265.2

TSS clone G clone + 16402308 AT4G34265.1, AT4G34265.2

TSS clone C clone + 16402309 AT4G34265.1, AT4G34265.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	16402269	AT4G34265.1, AT4G34265.2
TSS clone	`T`	clone	+	16402274	AT4G34265.1, AT4G34265.2
TSS clone	`G`	clone	+	16402280	AT4G34265.1, AT4G34265.2
TSS clone	`G`	clone	+	16402281	AT4G34265.1, AT4G34265.2
TSS clone	`C`	clone	+	16402285	AT4G34265.1, AT4G34265.2
TSS clone	`A`	clone	+	16402293	AT4G34265.1, AT4G34265.2
TSS clone	`G`	clone	+	16402308	AT4G34265.1, AT4G34265.2
TSS clone	`C`	clone	+	16402309	AT4G34265.1, AT4G34265.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCTCTC + 16402231 16402239 AT4G34265.1, AT4G34265.2

Y Patch TCTCTTCTT + 16402270 16402278 AT4G34265.1, AT4G34265.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCTCTC`	+	16402231	16402239	AT4G34265.1, AT4G34265.2
Y Patch	`TCTCTTCTT`	+	16402270	16402278	AT4G34265.1, AT4G34265.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATAAACCGAACCA + 16402197 16402209 AT4G34265.1, AT4G34265.2

AtREG598 ATAAACCG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TAAACCGA     PPDB Motif AACCG(G/A) PLACE Motif

AtREG568   AAACCGAA    PPDB Motif AACCG(G/A) PLACE Motif

AtREG556    AACCGAAC   PPDB Motif AACCG(G/A) PLACE Motif

AtREG451     ACCGAACC PPDB Motif PLACE Motif

AtREG655      CCGAACCA PPDB Motif PLACE Motif

REG CCAAACCG + 16402212 16402219 AT4G34265.1, AT4G34265.2

AtREG550 CCAAACCG PPDB Motif AACCG(G/A) PLACE Motif