PlantPromoterDB promoter information of AT4G34360.1
Summary of Gene (AT4G34360.1)
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Overview
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Focused view (chromosome 4: 16431011-16432210)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G34360.1 5'->3' (+) Promoter sequence AT4G34350.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G34360.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 33 | - | 16431112 | AT4G34350.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 16431114 | AT4G34350.1 |
| TSS clone | T | clone | - | 16431113 | AT4G34350.1 |
| TSS clone | G | clone | - | 16431112 | AT4G34350.1 |
| TSS clone | G | clone | - | 16431111 | AT4G34350.1 |
| TSS clone | A | clone | - | 16431110 | AT4G34350.1 |
| TSS clone | A | clone | - | 16431104 | AT4G34350.1 |
| TSS clone | T | clone | - | 16431100 | AT4G34350.1 |
| TSS clone | A | clone | - | 16431093 | AT4G34350.1 |
| TSS clone | C | clone | - | 16431065 | AT4G34350.1 |
| TSS clone | G | clone | - | 16431062 | AT4G34350.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTATAAATG | - | 16431138 | 16431146 | AT4G34350.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCCATTAT | - | 16431331 | 16431338 | AT4G34350.1 | ||||
| AtREG546 | CCCATTAT | PPDB Motif | PLACE Motif | ||||||