PlantPromoterDB promoter information of AT4G34410
Summary of Gene (AT4G34410)
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Overview
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Focused view (chromosome 4: 16450992-16452191)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G34410 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G34410
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 16451876 | -116 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 16451876 | -116 |
| TSS clone | A | clone | + | 16451883 | -109 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATATAAATA | + | 16451839 | 16451848 | -153 | -144 |
| Y Patch | TCTTTCTC | + | 16451854 | 16451861 | -138 | -131 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGCACGTGTT | + | 16451740 | 16451749 | -252 | -243 | |||
| AtREG541 | CGCACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | ||||
| AtREG590 | CACGTGTT | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | ACGCCACGTAG | + | 16451806 | 16451816 | -186 | -176 | |||
| AtREG508 | ACGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG413 | GCCACGTA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG495 | CCACGTAG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||