PlantPromoterDB promoter information of AT4G35450.1

Summary of Gene (AT4G35450.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G35450 TAIR NCBI
Gene model	AT4G35450.1
Description	Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.

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Overview

Focused view (chromosome 4: 16838862-16840061)

`Genome position from initiation codon` `AT4G35450.2 AT4G35450.3 AT4G35450.4 TSS from cDNA TSS information AT4G35450.1 5'->3' (+) Promoter sequence AT4G35440.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G35450.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 13 + 16839687 -175

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	13	+	16839687	-175

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 16839551 -311

TSS clone T clone + 16839631 -231

TSS clone T clone + 16839633 -229

TSS clone A clone + 16839639 -223

TSS clone A clone + 16839640 -222

TSS clone A clone + 16839687 -175

TSS clone A clone + 16839688 -174

TSS clone T clone + 16839691 -171

TSS clone C clone + 16839695 -167

TSS clone T clone + 16839768 -94

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	16839551	-311
TSS clone	`T`	clone	+	16839631	-231
TSS clone	`T`	clone	+	16839633	-229
TSS clone	`A`	clone	+	16839639	-223
TSS clone	`A`	clone	+	16839640	-222
TSS clone	`A`	clone	+	16839687	-175
TSS clone	`A`	clone	+	16839688	-174
TSS clone	`T`	clone	+	16839691	-171
TSS clone	`C`	clone	+	16839695	-167
TSS clone	`T`	clone	+	16839768	-94

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTTCTTCTTCTTCTTCCT + 16839708 16839725 -154 -137

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTTCTTCTTCTTCTTCCT`	+	16839708	16839725	-154	-137
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TACGTGGCT + 16839416 16839424 -446 -438

AtREG413 TACGTGGC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG450 ACGTGGCT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

REG ATGGGCTTGGGCCTTG + 16839444 16839459 -418 -403

AtREG378 ATGGGCTT         PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG525 TGGGCTTG        PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG505      CTTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356       TTGGGCCT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353        TGGGCCTT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG398         GGGCCTTG PPDB Motif GCCCA PLACE Motif GGGCC

REG TATATGGGCCAAT + 16839473 16839485 -389 -377

AtREG620 TATATGGG      PPDB Motif GCCCA PLACE Motif

AtREG432 ATATGGGC     PPDB Motif GCCCA PLACE Motif

AtREG364   TATGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490    ATGGGCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484     TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG446      GGGCCAAT CK PPDB Motif GCCCA PLACE Motif GGGCC

REG AAAAGGCC + 16839508 16839515 -354 -347

AtREG459 AAAAGGCC PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TACGTGGCT`		+	16839416	16839424	-446	-438
	AtREG413	`TACGTGGC`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG450	`ACGTGGCT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
REG	`ATGGGCTTGGGCCTTG`		+	16839444	16839459	-418	-403
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG525	`TGGGCTTG`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG505	`CTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG398	`GGGCCTTG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`TATATGGGCCAAT`		+	16839473	16839485	-389	-377
	AtREG620	`TATATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG432	`ATATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG364	`TATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`ATGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG446	`GGGCCAAT`	CK	PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`AAAAGGCC`		+	16839508	16839515	-354	-347
	AtREG459	`AAAAGGCC`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 + 16840054 AT4G35450.4

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	+	16840054	AT4G35450.4

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 16839369 AT4G35440.1

TSS clone peak T clone - 16839368 AT4G35440.1

TSS clone G clone - 16839352 AT4G35440.1

TSS clone A clone + 16840024 AT4G35450.4

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	16839369	AT4G35440.1
TSS clone peak	`T`	clone	-	16839368	AT4G35440.1
TSS clone	`G`	clone	-	16839352	AT4G35440.1
TSS clone	`A`	clone	+	16840024	AT4G35450.4

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AGCCACGTA - 16839416 16839424 AT4G35440.1

AtREG450 AGCCACGT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG413 GCCACGTA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

REG CAAGGCCCAAGCCCAT - 16839444 16839459 AT4G35440.1

AtREG398 CAAGGCCC         PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353 AAGGCCCA        PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   AGGCCCAA       PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG505    GGCCCAAG      PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG525        CAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378         AAGCCCAT PPDB Motif GCCCA PLACE Motif TGGGCY

REG ATTGGCCCATATA - 16839473 16839485 AT4G35440.1

AtREG446 ATTGGCCC      CK PPDB Motif GCCCA PLACE Motif GGGCC

AtREG484 TTGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490   TGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364    GGCCCATA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG432     GCCCATAT PPDB Motif GCCCA PLACE Motif

AtREG620      CCCATATA PPDB Motif GCCCA PLACE Motif

REG GGCCTTTT - 16839508 16839515 AT4G35440.1

AtREG459 GGCCTTTT PPDB Motif PLACE Motif

REG CTTAATGG + 16839858 16839865 AT4G35450.4

AtREG604 CTTAATGG PPDB Motif PLACE Motif TTAATGG