PlantPromoterDB promoter information of AT4G35760.1

Summary of Gene (AT4G35760.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G35760 TAIR NCBI
Gene model	AT4G35760.1
Description	LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin K epoxide reductase (InterPro:IPR012932), Thioredoxin-like fold (InterPro:IPR012336); Has 447 Blast hits to 447 proteins in 86 species: Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 16945622-16944423)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G35760.1 5'->3' (-) Promoter sequence AT4G35770.1 AT4G35770.2 AT4G35770.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G35760.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 8 - 16944623 -1

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	8	-	16944623	-1

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 16944677 -55

TSS clone G clone - 16944660 -38

TSS clone A clone - 16944658 -36

TSS clone G clone - 16944647 -25

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	16944677	-55
TSS clone	`G`	clone	-	16944660	-38
TSS clone	`A`	clone	-	16944658	-36
TSS clone	`G`	clone	-	16944647	-25

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTTAGGCCCAATAT - 16944705 16944718 -83 -96

AtREG430 TTTAGGCC       PPDB Motif PLACE Motif

AtREG360 TTAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358   TAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355      GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509       CCCAATAT PPDB Motif PLACE Motif

REG ATTTGGGCCTC - 16944720 16944730 -98 -108

AtREG421 ATTTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG447    TGGGCCTC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GTAAGGCCCAATTG - 16944762 16944775 -140 -153

AtREG530 GTAAGGCC       PPDB Motif PLACE Motif

AtREG351 TAAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG418      GCCCAATT PPDB Motif GCCCA PLACE Motif

AtREG647       CCCAATTG PPDB Motif PLACE Motif

REG TCGGACGG - 16944787 16944794 -165 -172

AtREG594 TCGGACGG PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTTAGGCCCAATAT`		-	16944705	16944718	-83	-96
	AtREG430	`TTTAGGCC`		PPDB Motif		PLACE Motif
	AtREG360	`TTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG509	`CCCAATAT`		PPDB Motif		PLACE Motif
REG	`ATTTGGGCCTC`		-	16944720	16944730	-98	-108
	AtREG421	`ATTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG373	`TTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG447	`TGGGCCTC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`GTAAGGCCCAATTG`		-	16944762	16944775	-140	-153
	AtREG530	`GTAAGGCC`		PPDB Motif		PLACE Motif
	AtREG351	`TAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG418	`GCCCAATT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG647	`CCCAATTG`		PPDB Motif		PLACE Motif
REG	`TCGGACGG`		-	16944787	16944794	-165	-172
	AtREG594	`TCGGACGG`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 20 + 16945026 AT4G35770.1, AT4G35770.2, AT4G35770.3

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	20	+	16945026	AT4G35770.1, AT4G35770.2, AT4G35770.3

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 16945021 AT4G35770.1, AT4G35770.2, AT4G35770.3

TSS clone A clone + 16945022 AT4G35770.1, AT4G35770.2, AT4G35770.3

TSS clone T clone + 16945023 AT4G35770.1, AT4G35770.2, AT4G35770.3

TSS clone A clone + 16945027 AT4G35770.1, AT4G35770.2, AT4G35770.3

TSS clone A clone + 16945030 AT4G35770.1, AT4G35770.2, AT4G35770.3

TSS clone T clone + 16945034 AT4G35770.1, AT4G35770.2, AT4G35770.3

TSS clone A clone + 16945037 AT4G35770.1, AT4G35770.2, AT4G35770.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	16945021	AT4G35770.1, AT4G35770.2, AT4G35770.3
TSS clone	`A`	clone	+	16945022	AT4G35770.1, AT4G35770.2, AT4G35770.3
TSS clone	`T`	clone	+	16945023	AT4G35770.1, AT4G35770.2, AT4G35770.3
TSS clone	`A`	clone	+	16945027	AT4G35770.1, AT4G35770.2, AT4G35770.3
TSS clone	`A`	clone	+	16945030	AT4G35770.1, AT4G35770.2, AT4G35770.3
TSS clone	`T`	clone	+	16945034	AT4G35770.1, AT4G35770.2, AT4G35770.3
TSS clone	`A`	clone	+	16945037	AT4G35770.1, AT4G35770.2, AT4G35770.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box ATTATATAAAC + 16944988 16944998 AT4G35770.1, AT4G35770.2, AT4G35770.3

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`ATTATATAAAC`	+	16944988	16944998	AT4G35770.1, AT4G35770.2, AT4G35770.3
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CAATTGGGCCTTAC + 16944762 16944775 AT4G35770.1, AT4G35770.2, AT4G35770.3

AtREG647 CAATTGGG       PPDB Motif PLACE Motif

AtREG418 AATTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353     TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351      GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG530       GGCCTTAC PPDB Motif PLACE Motif

REG CCGTCCGA + 16944787 16944794 AT4G35770.1, AT4G35770.2, AT4G35770.3

AtREG594 CCGTCCGA PPDB Motif PLACE Motif

REG GCTGACGTGACA + 16944953 16944964 AT4G35770.1, AT4G35770.2, AT4G35770.3

AtREG515 GCTGACGT     SA PPDB Motif ACGT PLACE Motif ACGT

AtREG440 CTGACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG606     ACGTGACA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG