PlantPromoterDB promoter information of AT4G35770

Summary of Gene (AT4G35770)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G35770 TAIR NCBI
Gene model	AT4G35770
Description	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.

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Overview

Focused view (chromosome 4: 16944073-16945272)

`Genome position from initiation codon` `AT4G35770.1 AT4G35770.2 AT4G35770.3 TSS from cDNA TSS information AT4G35770 5'->3' (+) Promoter sequence AT4G35760.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G35770

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 20 + 16945026 -47

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	20	+	16945026	-47

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 16945021 -52

TSS clone A clone + 16945022 -51

TSS clone T clone + 16945023 -50

TSS clone A clone + 16945027 -46

TSS clone A clone + 16945030 -43

TSS clone T clone + 16945034 -39

TSS clone A clone + 16945037 -36

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	16945021	-52
TSS clone	`A`	clone	+	16945022	-51
TSS clone	`T`	clone	+	16945023	-50
TSS clone	`A`	clone	+	16945027	-46
TSS clone	`A`	clone	+	16945030	-43
TSS clone	`T`	clone	+	16945034	-39
TSS clone	`A`	clone	+	16945037	-36

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box ATTATATAAAC + 16944988 16944998 -85 -75

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`ATTATATAAAC`	+	16944988	16944998	-85	-75
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CAATTGGGCCTTAC + 16944762 16944775 -311 -298

AtREG647 CAATTGGG       PPDB Motif PLACE Motif

AtREG418 AATTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353     TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351      GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG530       GGCCTTAC PPDB Motif PLACE Motif

REG CCGTCCGA + 16944787 16944794 -286 -279

AtREG594 CCGTCCGA PPDB Motif PLACE Motif

REG GCTGACGTGACA + 16944953 16944964 -120 -109

AtREG515 GCTGACGT     SA PPDB Motif ACGT PLACE Motif ACGT

AtREG440 CTGACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG606     ACGTGACA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CAATTGGGCCTTAC`		+	16944762	16944775	-311	-298
	AtREG647	`CAATTGGG`		PPDB Motif		PLACE Motif
	AtREG418	`AATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG530	`GGCCTTAC`		PPDB Motif		PLACE Motif
REG	`CCGTCCGA`		+	16944787	16944794	-286	-279
	AtREG594	`CCGTCCGA`		PPDB Motif		PLACE Motif
REG	`GCTGACGTGACA`		+	16944953	16944964	-120	-109
	AtREG515	`GCTGACGT`	SA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG440	`CTGACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG606	`ACGTGACA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 8 - 16944623 AT4G35760.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	8	-	16944623	AT4G35760.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 16944677 AT4G35760.1

TSS clone G clone - 16944660 AT4G35760.1

TSS clone A clone - 16944658 AT4G35760.1

TSS clone G clone - 16944647 AT4G35760.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	16944677	AT4G35760.1
TSS clone	`G`	clone	-	16944660	AT4G35760.1
TSS clone	`A`	clone	-	16944658	AT4G35760.1
TSS clone	`G`	clone	-	16944647	AT4G35760.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTTAGGCCCAATAT - 16944705 16944718 AT4G35760.1

AtREG430 TTTAGGCC       PPDB Motif PLACE Motif

AtREG360 TTAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358   TAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355      GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509       CCCAATAT PPDB Motif PLACE Motif

REG ATTTGGGCCTC - 16944720 16944730 AT4G35760.1

AtREG421 ATTTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG447    TGGGCCTC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GTAAGGCCCAATTG - 16944762 16944775 AT4G35760.1

AtREG530 GTAAGGCC       PPDB Motif PLACE Motif

AtREG351 TAAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG418      GCCCAATT PPDB Motif GCCCA PLACE Motif

AtREG647       CCCAATTG PPDB Motif PLACE Motif

REG TCGGACGG - 16944787 16944794 AT4G35760.1

AtREG594 TCGGACGG PPDB Motif PLACE Motif