PlantPromoterDB promoter information of AT4G37190.2
Summary of Gene (AT4G37190.2)
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Overview
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Focused view (chromosome 4: 17506453-17507652)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G37190.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G37190.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 5 | + | 17507049 | -404 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 17507050 | -403 |
| TSS clone | A | clone | + | 17507071 | -382 |
| TSS clone | T | clone | + | 17507259 | -194 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGGTTCGGT | + | 17506907 | 17506915 | -546 | -538 | |||
| AtREG655 | TGGTTCGG | PPDB Motif | PLACE Motif | ||||||
| AtREG451 | GGTTCGGT | PPDB Motif | PLACE Motif | ||||||
| REG | ACCGGTTTAT | + | 17506936 | 17506945 | -517 | -508 | |||
| AtREG436 | ACCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ACCCGGTTAT | + | 17506948 | 17506957 | -505 | -496 | |||
| AtREG455 | ACCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG548 | CCGGTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | TCTGGGCCTCA | + | 17506987 | 17506997 | -466 | -456 | |||
| AtREG397 | TCTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG410 | CTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG447 | TGGGCCTC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG587 | GGGCCTCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||