Summary of Gene (AT4G37410)
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Overview |
Genome position
from initiation codon AT4G37420.1 TSS from cDNA TSS information AT4G37410 5'->3' (+) Promoter sequence AT4G37409.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 102 | + | 17590824 | -24 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 17590778 | -70 |
TSS clone | A | clone | + | 17590822 | -26 |
TSS clone | A | clone | + | 17590824 | -24 |
TSS clone | A | clone | + | 17590825 | -23 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTACTATAAATA | + | 17590786 | 17590797 | -62 | -51 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAATTACG | + | 17590677 | 17590684 | -171 | -164 | |||
AtREG646 | TAATTACG | ABA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 17 | + | 17592260 | AT4G37420.1 |
TSS peak | G | 4 | + | 17592451 | AT4G37420.1 |
TSS peak | A | 4 | + | 17592519 | AT4G37420.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 17592799 | AT4G37409.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TAAGGGTATT | + | 17592024 | 17592033 | AT4G37420.1 | ||||
AtREG570 | TAAGGGTA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
AtREG623 | AAGGGTAT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
AtREG567 | AGGGTATT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | GCCGGTTC | + | 17592360 | 17592367 | AT4G37420.1 | ||||
AtREG637 | GCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | GTGCCACGTGACA | + | 17592415 | 17592427 | AT4G37420.1 | ||||
AtREG444 | GTGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
AtREG583 | CACGTGAC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | GCTGACGT | - | 17592933 | 17592940 | AT4G37409.1 | ||||
AtREG515 | GCTGACGT | SA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
REG | CCCATTAA | - | 17592955 | 17592962 | AT4G37409.1 | ||||
AtREG396 | CCCATTAA | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  |