PlantPromoterDB promoter information of AT4G37432
Summary of Gene (AT4G37432)
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Overview
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Focused view (chromosome 4: 17592740-17591541)
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Genome position
TSS from cDNA TSS information AT4G37432 5'->3' (-) Promoter sequence AT4G37410.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G37432
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 17 | + | 17592260 | AT4G37420.1 |
| TSS peak | G | 4 | + | 17592451 | AT4G37420.1 |
| TSS peak | A | 4 | + | 17592519 | AT4G37420.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TAAGGGTATT | + | 17592024 | 17592033 | AT4G37420.1 | ||||
| AtREG570 | TAAGGGTA | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG623 | AAGGGTAT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG567 | AGGGTATT | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | GCCGGTTC | + | 17592360 | 17592367 | AT4G37420.1 | ||||
| AtREG637 | GCCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GTGCCACGTGACA | + | 17592415 | 17592427 | AT4G37420.1 | ||||
| AtREG444 | GTGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG583 | CACGTGAC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | ||||
| AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||