PlantPromoterDB promoter information of AT4G37432
Summary of Gene (AT4G37432)
|
Overview
|
Focused view (chromosome 4: 17593640-17592441)
|
Genome position
TSS from cDNA TSS information AT4G37432 5'->3' (-) Promoter sequence AT4G37410.1
AT4G37420.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT4G37432
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 4 | + | 17592451 | AT4G37420.1 |
| TSS peak | A | 4 | + | 17592519 | AT4G37420.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | G | clone | - | 17592799 | AT4G37409.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GCTGACGT | - | 17592933 | 17592940 | AT4G37409.1 | ||||
| AtREG515 | GCTGACGT | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | CCCATTAA | - | 17592955 | 17592962 | AT4G37409.1 | ||||
| AtREG396 | CCCATTAA | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||