PlantPromoterDB promoter information of AT4G37460.1
Summary of Gene (AT4G37460.1)
|
Overview
|
Focused view (chromosome 4: 17616534-17615335)
|
Genome position
from initiation codon TSS from cDNA TSS information AT4G37460.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT4G37460.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 2 | - | 17615862 | -328 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 17615776 | -242 |
| TSS clone | T | clone | - | 17615708 | -174 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCACGTGAC | - | 17615902 | 17615911 | -368 | -377 | |||
| AtREG583 | GTCACGTGAC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | ||||
| REG | AGTGGGCTAGGCCCATATA | - | 17615925 | 17615943 | -391 | -409 | |||
| AtREG510 | AGTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG475 | CTAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG358 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG364 | GGCCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG432 | GCCCATAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG620 | CCCATATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TAGCCCATTG | - | 17615964 | 17615973 | -430 | -439 | |||
| AtREG581 | TAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG372 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG551 | GCCCATTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAAGTCAA | - | 17616149 | 17616156 | -615 | -622 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||