PlantPromoterDB promoter information of AT4G37610
Summary of Gene (AT4G37610)
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Overview
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Focused view (chromosome 4: 17672992-17671793)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G37610 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G37610
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | - | 17672362 | -370 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 17672348 | -356 |
| TSS clone | T | clone | - | 17672344 | -352 |
| TSS clone | T | clone | - | 17672342 | -350 |
| TSS clone | A | clone | - | 17672340 | -348 |
| TSS clone | T | clone | - | 17672339 | -347 |
| TSS clone | T | clone | - | 17672250 | -258 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTTCTTTCTCT | - | 17672342 | 17672356 | -350 | -364 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGTCCCA | - | 17672427 | 17672436 | -435 | -444 | |||
| AtREG523 | GTGGGTCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG615 | TGGGTCCC | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| AtREG596 | GGGTCCCA | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | TAAAGGCC | - | 17672577 | 17672584 | -585 | -592 | |||
| AtREG467 | TAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | ACGTCGTC | - | 17672633 | 17672640 | -641 | -648 | |||
| AtREG526 | ACGTCGTC | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||